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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgcttcccgcctttgccttatctcgccccccggtctccggctaagttcataggggcccagttcggatctctctgtttctgtgacgcggcgggt...

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 1
GACCCTCCGCGGC-GCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgcttcccgcctttgccttatc-tcgccccccggtctccggcta--agttcataggggcccagttcggatctctctgtttctgtgacgcggcgggt-
  |      | || ||| |||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |   || ||    | |  || ||  ||    |||||||| |    ||   ||||| |||  |  ||||||    |   |     || || || | 
-GCGTGAGCCAGCAGCAGCCATGGTGCTGTTCTCGGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatcccaccaccacctcttcctcctcatccgattgtctccggtttcccgtcactagggccccgatctggatctaggcgcgac----gcgtggtggatg

upper sequence: GRMZM2G109383_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 1
GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgcttcccgcctttgccttatctcgccccccggtctccggctaagttcataggggcccagttcggatctctctgtttctgtgacgcggcgggt
  |     ||    ||  ||||| |||||||| |||  |       |  ||||| |||||||| ||||||||||| || ||||| || ||||||||||||||||| |  ||        |    |  |||  |    |   ||   | |    | | |   |  |   |||        ||| |      |    |   |
TTCAGGTAGCCAGCCAGTCATGGTGCTCTTCAATGTTTCACGCGTAGAGACCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatctcgatttgatcctttcctctatcaattcatgctttagtttttctgagaattgtactactcgctggatcttgtcttcaaatcatatcttct

upper sequence: GRMZM2G109383_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 1
GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgcttcccgcctttgccttatctcgccccccggtctccggctaagttcataggggcccagttcggatctctctgtttctgtgacgcggcgggt-------
|     | ||    || |||||| |||||||| |||  |       |  ||||| |||||||| || |||||||| || ||||| || ||||||||||||||  ||||   || ||  |||  | | ||    |   |  ||   |  | ||||  |  | || |  | |   ||| |||  || |||    | |  | |       
GGTAGCCAGCCAGCCAGCCATGGTGCTCTTCAATGTTTCACGCGTTGAGACCACTCCCTTCGATGGACAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgt--cctta--tctcgattttatcctttcct--ctatcaatccatgctttagtttttccgcgctcgatacat-tctttcttcttttgttcttctgacgattgtacta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211183449|gb|FL327212.1|FL327212
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211399579|gb|FL345595.1|FL345595
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCAGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     CACGCACCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CACGC-CCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|30088269|gb|CB886474.1|CB886474
EST:     TCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: TCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211519065|gb|FL311544.1|FL311544
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|8368954|gb|BE051899.1|BE051899
EST:     TTACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211514341|gb|FL311514.1|FL311514
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211520184|gb|FL353420.1|FL353420
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211354596|gb|FL343940.1|FL343940
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCATCATTCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     TCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: TCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|6536595|gb|AW224908.1|AW224908
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GT-ACTGNATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32921512|gb|CF026324.1|CF026324
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGC-AGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148974651|gb|EE025449.2|EE025449
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211056237|gb|FL359926.1|FL359926
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148951896|gb|EC897671.2|EC897671
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32909658|gb|CF014470.1|CF014470
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     AGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: AGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|28930952|gb|CB334313.1|CB334313
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211353999|gb|FL313767.1|FL313767
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149109604|gb|EE190283.2|EE190283
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211157734|gb|FL360814.1|FL360814
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211149502|gb|FL328552.1|FL328552
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTATCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTAGCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211472612|gb|FL331154.1|FL331154
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|20208242|gb|BQ134331.1|BQ134331
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 346

GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 428

GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 530

GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 933

GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCCTCCGCGGCGCAACCATGGGGCTCTTCACTGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgcttcccgcctttgccttatctcgccccccggtctccggctaagttcataggggcccagttcggatctctctgtttctgtgacgcggcgggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc