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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTTTCGCCTGCCTGCACACGCCGCCGCCGGCAATGGCCGCCTGCGACGACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTGgttcgctctcccccttctctgcttttaccctacccttctgaccgagctgaagcagcaggcaatctgattctgacgcgacaatggacggcctggccgtgcggccgctcgcag

Basic information

species Zea mays
transcript GRMZM2G109032_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109032_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g35340.1 (Oryza sativa), 5'ss of exon 1
-CCCTTTTCGCCTGCCTGCACACGCCGCCGCCGGCAATGGCCGCCTGCGACGACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTGgttcgctctcccccttctctgcttttaccctacccttctgaccgagctgaagcagcaggcaatctgattctgacgcgacaatg-gacggcctggccgtgcggccgctcgcag
  |     ||||  ||  |   |  |   ||   |   ||| ||    | |||||||||||| |||   ||||||||||||||||| |||||||| |||||||| | |  |||  || |||  |||| |    |   ||||  || |      | ||  |  | | |||   | | ||   ||| || |||  | | ||| |  ||| |||||
GGCGGCGGCGCC-ACCCACCTGCTTCATTGCTCACTCCGGCGGCGATGGCCGACGACGTCGCGCCGCGCACCGCCTCCGCCTACCTCGACCCCTCCTACTGgtttggttccccttttttct--ttttccttctcttctctgctcgcggctcgccggcgcggcagcggatgg-gtctcgctgatgtgatggctggcctgtgtgcgcgcgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211091486|gb|FK999634.1|FK999634
EST:     GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTG                         GGACGCGCGGTTTGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC
genomic: GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTGgttcgctctc ... ccgctcgcagGGACGCGCGGTTCGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC
EST: gi|211226341|gb|FL315377.1|FL315377
EST:     GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTG                         GGACGCGCGGTTTGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC
genomic: GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTGgttcgctctc ... ccgctcgcagGGACGCGCGGTTCGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC
EST: gi|148957467|gb|EC903543.2|EC903543
EST:     GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTG                         GGACGCGCGGTTCGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC
genomic: GACGACGTCGCCCCGTCAACCGCCTCCGCCTACCTTGACCCCTCTTACTGgttcgctctc ... ccgctcgcagGGACGCGCGGTTCGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTC