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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGAGGAGCACGAGGTTTACGGCCAGGAGATCCCTGAGGACGGCGATATGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctctgtattcgtgtgtttcacgctataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacag

Basic information

species Zea mays
transcript GRMZM2G108919_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108919_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 1
CGACGAGGAGCACGAGGTTTACGGCCAGGAGATCCCTGAGGACGGCGATATGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgta---ccacctctgt-attcgtgtgttt-cacgctat-accctagcaatgggtcc--ttgcggattgttgacccccctcggggtgcgtacag
||| |||||||||||||| ||||| || |||||||| |||||||| || ||||||||||| ||||| || |||||| ||| |||||||||||| ||||||||    | |||||  | || || |  | |     |||| | |||| |  |   ||   | || || |  | |||||  | ||  ||  | |||
CGAGGAGGAGCACGAGGTGTACGGGCAAGAGATCCCGGAGGACGGGGACATGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgt-tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211004051|gb|FL318405.1|FL318405
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGASATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|89247955|gb|DY619741.1|DY619741
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG