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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACGGCGACGGCAACGACTGGGGCGACAGTCGCTGCCGCCCTACTTGCCGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaaccccttcatcttctcttcctgctgtgcgaaactgaggacccaaaccctaacctactatttgtttttcggatctgatctatgcatgcattac...

Basic information

species Zea mays
transcript GRMZM2G108739_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101394818|gb|EB819343.1|EB819343
EST:     CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG                         GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: gi|211488685|gb|FL428190.1|FL428190
EST:     CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG                         GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: gi|101394052|gb|EB818959.1|EB818959
EST:     CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG                         GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA