1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAAAGTGAAGATTGCAGAGCATAAGCTTACTGGACATAGGGTTGCTATAAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttgttatccagtcattttgcattttcactaatatttttttgataataaacaagtttagttttaatagtgcttttgataatattaatacatggagttgctttgataattaagaccacatccctccctatcatgtttccag
species | Zea mays |
transcript | GRMZM2G107867_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|60359581|gb|DN226554.1|DN226554
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|71447675|gb|DR828725.1|DR828725
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAAGTGAAGATTGCAGAGCATAAGCTTACTGGACATAGGGTTGCTATAAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttgttatccagtcattttgcattttcactaatatttttttgataataaacaagtttagttttaatagtgcttttgataatattaatacatggagttgctttgataattaagaccacatccctccctatcatgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA