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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCCCACTCGTAGGTGTTCTCCCCGTCTCCGCCCGCACTCGCTCGTCCGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgctgcttgctgttctcgtggatttcctcctggttcgcacggctctcctgcttcgattcttcggattcggaactgggggaataattgtcgggg...

Basic information

species Zea mays
transcript GRMZM2G107867_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|108824164|gb|EC278172.1|EC278172
EST:     CGCGCGCAGGAAGGTTGACCTGTCGGGGGCCGGCGAGCCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|71329108|gb|DR801263.1|DR801263
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|148999574|gb|EE036551.2|EE036551
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427351|gb|FL101764.1|FL101764
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427355|gb|FL101768.1|FL101768
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|89758870|gb|DY687889.1|DY687889
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427354|gb|FL101767.1|FL101767
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAGCCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427350|gb|FL101763.1|FL101763
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGACGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427353|gb|FL101766.1|FL101766
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|71447675|gb|DR828725.1|DR828725
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211210979|gb|FL114021.1|FL114021
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211427352|gb|FL101765.1|FL101765
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: gi|211440534|gb|FL230371.1|FL230371
EST:     CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G                         AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG