Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgtctcacgcatttcctgcctcctcctgtttgtcctcttggtttgtggatgcttctctgatgctacagctgcttccgtggtgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G107807_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107807_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 5'ss of exon 1
GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgt---cagcttgtctcacgcatttcctgcctcctcctgtttgtcctcttggtttgtggatgcttctctgatgctacagctgcttccgtggtgc-gcgcag
|  |  |  ||||||||||||||| ||||||| ||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||    ||||    ||     | |   |  | ||| |   ||     ||| ||  | |||          ||||     |  ||  |||  |  | ||||
GCGGCGGGGGCGGCGGTGCACCACAACGCGCGGTCCGCGGAGGACGTCTTCCGCGACTTCCGCGCGCGCCGCGCGGGCATCGTCAAGGCGCTCACCACCGgtgggtagctctcttcggtgttgtttgggatgctctttgctgattgattgattgattgatttgatggatttgctgttcttttttttgtgtggttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131977|gb|FL391860.1|FL391860
EST:     CCGCGATTTCCGCGCGCGCCGC-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211456087|gb|FL381465.1|FL381465
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211533316|gb|FL400721.1|FL400721
EST:     CCGCGATTTCCGCGCGCG-C-CGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211518080|gb|FL375342.1|FL375342
EST:     CGCGATTTCCGCGCGCG-C-CGSCGGTCATCGTCAAGGCACTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211448349|gb|FL416390.1|FL416390
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211006471|gb|FL416472.1|FL416472
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211032021|gb|FL382023.1|FL382023
EST:     CCGCGATTTCCGCGCGCG-C-CGCCGGCATCGTCAAGGCACTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211275133|gb|FL388209.1|FL388209
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211368566|gb|FL387073.1|FL387073
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211490133|gb|FL369790.1|FL369790
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|9731349|gb|BE510101.1|BE510101
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAG
EST: gi|211147466|gb|FL403065.1|FL403065
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211245223|gb|FL396979.1|FL396979
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211118465|gb|FL397828.1|FL397828
EST:     CCGCGATTTCCGCGCGCG-C-CGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211017612|gb|FL417337.1|FL417337
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211533630|gb|FL412547.1|FL412547
EST:     CCGCGATTTCCGCGCGCG-C-CGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211284193|gb|FL390126.1|FL390126
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211487237|gb|FL369763.1|FL369763
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211080228|gb|FL420006.1|FL420006
EST:     CGCGATTTCCGCGCGCGCCGCGCCGGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCC-GGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211439460|gb|FL404628.1|FL404628
EST:     CCGCGATTTCCGCGCGCGCCGC-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGA
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGA
EST: gi|71449245|gb|DR830295.1|DR830295
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211148706|gb|FL387802.1|FL387802
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211394901|gb|FL373451.1|FL373451
EST:     CGCGATTTCCGCGCGCGCCGCGCCGGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCC-GGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|9825085|gb|BE575272.1|BE575272
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211145918|gb|FL393244.1|FL393244
EST:     CCGCGATTTCCGCGCGCGCCGC-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAGAGAAAGA
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGAGAAAGA
EST: gi|211487550|gb|FL382355.1|FL382355
EST:     CCGCGATTTCCGCGCGCGCCGS-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211481948|gb|FL389371.1|FL389371
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|78104107|gb|DV522525.1|DV522525
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211481949|gb|FL389372.1|FL389372
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|88752364|gb|DY536505.1|DY536505
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211453813|gb|FL376134.1|FL376134
EST:     CCGCGATTTCCGCGCGCGCCACGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|89250768|gb|DY622554.1|DY622554
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211022044|gb|FL376173.1|FL376173
EST:     CGCGATTTCCGCGCGCGCCGCGCCTGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCC-GGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211153562|gb|FL410840.1|FL410840
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211114612|gb|FL414255.1|FL414255
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211453711|gb|FL371226.1|FL371226
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211379859|gb|FL407567.1|FL407567
EST:     CGCGATTTCCGCGCGCG-C-CGCCGGNCATCGTCAAGGCACTCACCACGG                         ATGT-GAGAAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAG-AAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211493579|gb|FL394425.1|FL394425
EST:     CCGCGATTTCCGCGCGCGCCACGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211046047|gb|FL423450.1|FL423450
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211518311|gb|FL387235.1|FL387235
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211449442|gb|FL371194.1|FL371194
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211378993|gb|FL369248.1|FL369248
EST:     CGCGATTTCCGCGCGCGCCGC-C-GGCATTCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGGCAT-CGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211481796|gb|FL382333.1|FL382333
EST:     CGCGATTTCCGCGCGCGCCGC-C-GGTCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAA-GTTCTATCAGCAGTGCGATCCAG
EST: gi|211419061|gb|FL425551.1|FL425551
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211178078|gb|FL404392.1|FL404392
EST:     CCGCGATTTCCGCGCGCGCCGC-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211326305|gb|FL423243.1|FL423243
EST:     CGCGATTTCCGCGCGCGTCGS-C-GGNCATCGTCAAGGCACTCACCACGG                         ATGTGAAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|71444897|gb|DR825947.1|DR825947
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211090109|gb|FL396342.1|FL396342
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148935253|gb|EC879290.2|EC879290
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211059742|gb|FL378981.1|FL378981
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211239004|gb|FL420053.1|FL420053
EST:     CCGCGATTTCCGCTCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211111987|gb|FL388631.1|FL388631
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211321008|gb|FL370062.1|FL370062
EST:     CCGCGATTTCCGCGCGCGTCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211282994|gb|FL428458.1|FL428458
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|71433177|gb|DR814227.1|DR814227
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211036769|gb|FL376251.1|FL376251
EST:     CCGCGATTTCCGCGCGCGCCGCM--GGCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211501842|gb|FL388425.1|FL388425
EST:     CGCGATTTCCGCGCGCGCCGC-C-GGNCATCGTCAAGGCACTCACCACGG                         ATGTGAAGAAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAA-GTTCTATCAGCAGTGCGATCCAG
EST: gi|211461444|gb|FL402438.1|FL402438
EST:     CGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCNRAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGYGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCA-AGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211490417|gb|FL381910.1|FL381910
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211439565|gb|FL408946.1|FL408946
EST:     CGCGATTTCCGCGCGCGCCGC-C-GGNCATCGTCAAGGCACTCACCACGG                         ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CGCGATTTCCGCGCGCGCCGCGCCGG-CATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211401195|gb|FL425442.1|FL425442
EST:     CCGCGATTTCCGCGCGCGCCGS-C-GGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211187659|gb|FL416607.1|FL416607
EST:     CCGCGATTTCCGCGCGCGCCGC-C-GNCATCGTCAAGGCACTCACCACGG                         ATGTGAAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|91873364|gb|EB403321.1|EB403321
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|91055582|gb|EB166000.1|EB166000
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211147119|gb|FL374600.1|FL374600
EST:     CCGCGATTTCCGCGCGCGTCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211266773|gb|FL410563.1|FL410563
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211429590|gb|FL426785.1|FL426785
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|22714717|gb|BU197516.1|BU197516
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211317278|gb|FL392927.1|FL392927
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211288132|gb|FL391421.1|FL391421
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211046046|gb|FL423449.1|FL423449
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211516346|gb|FL407294.1|FL407294
EST:     CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 965

GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 213

GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 181

GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 158

GAAGGCGCTGCGGCGGTGCACCACCACGCGCGCTCCCCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGCGCCGGCATCGTCAAGGCACTCACCACGGgtcagcttgt ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG