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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTTGTTATAGAGACCCTGCCTTGTCGGGGCAGCACACTTGGGACGCGAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtctcggggggaattctttagcccctcttcctcttcttcttctttccttccgcatgtctttggactcgctgctgttcttttgcttggtacccttggatctctgactccagcccgttccccgaaatttccag

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211470276|gb|FL336876.1|FL336876
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211537775|gb|FL336421.1|FL336421
EST:     GAGGAGGAGGACTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211528508|gb|FL328866.1|FL328866
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGC-TGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211529039|gb|FL347042.1|FL347042
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     GGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211519775|gb|FL337741.1|FL337741
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211329406|gb|FL358391.1|FL358391
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     GAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|91877308|gb|EB407265.1|EB407265
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCCGGATCCGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCCGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     TGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: TGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211061387|gb|FL333865.1|FL333865
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211262318|gb|FL317280.1|FL317280
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211237919|gb|FL362192.1|FL362192
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211525076|gb|FL312407.1|FL312407
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211538417|gb|FL360289.1|FL360289
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCC
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCC
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211023084|gb|FL313921.1|FL313921
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211213774|gb|FL353738.1|FL353738
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211362582|gb|FL351447.1|FL351447
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211136252|gb|FL346220.1|FL346220
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211320586|gb|FL352820.1|FL352820
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211162581|gb|FL363060.1|FL363060
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211126683|gb|FL312966.1|FL312966
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|19351033|gb|BM895565.1|BM895565
EST:     GTTGGTG-GCGAACTCGGGATCAG-GGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     ACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: ACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211135049|gb|FL315824.1|FL315824
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGMGGAGGGCTGCAG-CTRCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|148950038|gb|EC895570.2|EC895570
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     GTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211467483|gb|FL327943.1|FL327943
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAAGANGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     GGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211320872|gb|FL365292.1|FL365292
EST:     GAGGGGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211171826|gb|FL323734.1|FL323734
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211391856|gb|FL357117.1|FL357117
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211026505|gb|FL356245.1|FL356245
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAG-CTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST: gi|211050425|gb|FL364299.1|FL364299
EST:     GAGGGGGAGGAGTTGGTGAGYGAACTCGGGATCAGTGGGTGACCGCAGAG                         TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGTTTGTTATAGAGACCCTGCCTTGTCGGGGCAGCACACTTGGGACGCGAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtctcggggggaattctttagcccctcttcctcttcttcttctttccttccgcatgtctttggactcgctgctgttcttttgcttggtacccttggatctctgactccagcccgttccccgaaatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG