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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttgatggaaac...

Basic information

species Zea mays
transcript GRMZM2G107362_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 1
TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggt-gaatcctcgatcacgttgatggaaac--------
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |  |     |    | ||      | |   |||||    ||  ||||| |  | | ||||    | | |||  ||    ||||| ||||||         
TACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGGCAGAAGACGCACAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacgtaac--cctagctgtatcaccgtg---tgggtgcgatg----ctgtccgcggcttgatgtggccgaattggatcggcgcgtgcgttggtggaaaacctaggtt

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 1
TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttgatggaaac
|||||    |   ||||||| || |  |||||||   | || || ||||| |||||||||||||| |||||||| ||| | ||||||||||| ||  | |||  |       |||   |||   ||| |||||||           ||||     |  |   ||||   ||  | | | |||    |  | ||||  |  
TACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTTCGCCAAAAGACTCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtacc-------ctccgctaa---ccctaaccctaa----------ccctcttttcttc---ttttcaattccttacttctcttctatttcgatgacag-

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 1
TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatg-tgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttg-atggaaac
|||||||| || |||||||| || || ||||| ||| | || ||||||| |||||| ||||| ||||| || |||||||||||||| ||||| |||||||||    || | || | |        ||||||||||   | |||| |    ||  |     |    |||  |||           ||   |||   || | | 
TACTACCTCCAACACATCCACGATCTCCAGCTACAGGTTCGCCAGAAGAGCCATAATCTCAATCGCCTTGAAGCCCAGCGCAACGATCTCAATTCCCGAGgt--ttttccatcccaaaaccctaaccaaaccctaattttgatgctatgattttcagaatgatcattgtattgtgacgcttataattttgttatgtgcagaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32848306|gb|CD987987.1|CD987987
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32923562|gb|CF028374.1|CF028374
EST:     CCATAACCTCAACCGGCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|211538808|gb|FL146747.1|FL146747
EST:     CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32846583|gb|CD986264.1|CD986264
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|60398970|gb|DN231786.1|DN231786
EST:     CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|211065265|gb|FL146776.1|FL146776
EST:     CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32923495|gb|CF028307.1|CF028307
EST:     CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32923161|gb|CF027973.1|CF027973
EST:     CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG