1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttgatggaaac...
species | Zea mays |
transcript | GRMZM2G107362_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|32923562|gb|CF028374.1|CF028374
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGGCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|211538808|gb|FL146747.1|FL146747
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|60398970|gb|DN231786.1|DN231786
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|32846583|gb|CD986264.1|CD986264
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|211065265|gb|FL146776.1|FL146776
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|60352424|gb|DN219397.1|DN219397
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|60351658|gb|DN218631.1|DN218631
genomic: CCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|32923495|gb|CF028307.1|CF028307
genomic: CGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATGEST: gi|32923161|gb|CF027973.1|CF027973
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAG TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttc ... gttttttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttgatggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcgc