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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGGGGTGCAGCTCGCCGACAAGCTCAAGATCTTCAAAACCGACAACTTCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAGgtgaacctgcctgcctgcctgccatctctgatctggccgcgttgcgaggtccagctcgttcggctctatcctgctgcacctgttgtcagggtgtgttggg...

Basic information

species Zea mays
transcript GRMZM2G105652_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g10110.1 (Oryza sativa), 5'ss of exon 1
CGGCGGGGTGCAGCTCGCCGACAAGCTCAAGATCTTCAAAACCGACAACTTCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAGgtgaacctgcctgcctgcctgccatctctgatctggccgcgttgcgaggtc-cagctcgttcggctctat-cctgctgcacctgttgtcagggtgtgttggg---------
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TGGCGGGGTGCAGCTCGCCGACAAGCTCAAGATCTTCAAGACCGACAACTTCGATCCCGACGCGTACGTGCAGTCCAAGTGCCAGACGATGAACGAGAAGgtgagttg----------ttgtcctctctgatccggccgtggt-tgagctcgcccctcgatccgtcctccgcctttcgttggatcccccggggggtggtgggattccgcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440575|gb|DR821625.1|DR821625
EST:     TCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAG                         GAAATAAGACATTTGTGTTCTTATCTCCAAGACCTAAAGAAGGCTTCAGCT
genomic: TCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAGgtgaacctgc ... ttcatttcagGAAATAAGACATTTGTGTTCTTATCTCCAAGACCTAAAGAAGGCTTCAGCT
EST: gi|71767659|gb|DR965596.1|DR965596
EST:     TCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAG                         GAAATAAGACATTTGTGTTCTTATCTCCAAGACCTAAAGAAGGCTTCAGCT
genomic: TCGATCCCGACGCCTACGTGCAGTCCAAGTGCCAGACCATGAACGAGAAGgtgaacctgc ... ttcatttcagGAAATAAGACATTTGTGTTCTTATCTCCAAGACCTAAAGAAGGCTTCAGCT