Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211018633|gb|FL458034.1|FL458034EST: CTATAAAAAGAAAG GATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
genomic: CTATAAAAAGAAAGgtacaaatga ... cttcacacagGATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
EST:
gi|211495549|gb|FL012925.1|FL012925EST: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAG GATCAAACGCGTGCATTGGATATGATACGGACTGACCCCAGAGTTAAAAGG
genomic: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtacaaatga ... cttcacacagGATCAAACGCGTGCATTGGATATGATACGGACTGACCC-AGAGTTAAAAGG
EST:
gi|5762109|gb|AI967157.1|AI967157EST: TTCTGCC-CCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAG GATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
genomic: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtacaaatga ... cttcacacagGATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
EST:
gi|78022914|gb|DV491301.1|DV491301EST: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAG GATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
genomic: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtacaaatga ... cttcacacagGATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
EST:
gi|40336422|gb|CK370492.1|CK370492EST: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAG GATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
genomic: TTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtacaaatga ... cttcacacagGATCAAACGCGTGCATTGGATATGATACGGACTGACCCAGAGTTAAAAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCGTTGCAAAAGGAAAGTGTTCCTGTAAGGAGACTCATTGTGAACCAAGTTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtacaaatgatatggcaccgacagtttaaattttcagttaatacctggttcttgtaaaaaccactagcctgcaggaaaagttatgtatctcattttcttcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA