1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTACCCGCTGCCTACCACCACCAGCACGTCGCCGTGGCAGCACGACACCAGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaattcatttcactctgcatagtctattccccctctctccttctctcaaatctctagtatgtgtgtgtgtgtgacaggcaacaacatctctttgt...
species | Zea mays |
transcript | GRMZM2G105494_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAGGGAAAGCCAGCAGATGGCGTTTCCCAACTACGATTTGTTCGGAATCCGEST: gi|89250727|gb|DY622513.1|DY622513
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCC-AACTACGATTTGTTCGGAATCCG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGGEST: gi|88752329|gb|DY536470.1|DY536470
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGGEST: gi|211528371|gb|FL093827.1|FL093827
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGGEST: gi|78084337|gb|DV512730.1|DV512730
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGGEST: gi|71435603|gb|DR816653.1|DR816653
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACACAEST: gi|71435603|gb|DR816653.1|DR816653
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCAT--ACAgtacgtaatt ... ttactagca
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACACAEST: gi|78112567|gb|DV530961.1|DV530961
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCAT--ACAgtacgtaatt ... ttactagca
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGGEST: gi|76929547|gb|DV172057.1|DV172057
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
EST: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACA CAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
genomic: AGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaatt ... ttactagcagCAAGGAAAGCCAGCAGATGGCGTTTCCAACTACGATTTGTTCGGAATCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACCCGCTGCCTACCACCACCAGCACGTCGCCGTGGCAGCACGACACCAGCATCACAAGTAGCCATGGCCAGCCGGATTCTTGGAGCCAGCTCATACAgtacgtaattcatttcactctgcatagtctattccccctctctccttctctcaaatctctagtatgtgtgtgtgtgtgacaggcaacaacatctctttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc