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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtacccttcgccgacgtttactcttcctgctccgagtgtggcggccatagacgagttcacggagcacgattaccaaaccggcgaactggagtgctc...

Basic information

species Zea mays
transcript GRMZM2G105184_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105184_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g66320.1 (Oryza sativa), 5'ss of exon 1
AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgta--cccttcgccgacgtttactctt-cctgctccgagtgtggcggccatagacgagttcacggagcacgattaccaaaccggcgaactggagtgctc
 ||||||| |||| ||||||||| ||||||||||| ||||||||  | |||||||||||||| ||||||||||| ||  |  |||||||||||||||| |||  | |  |  ||||||  |  |  |  |  || || |      |  |  |      || |  |     | | | ||  |||   || |  |  ||| | | 
GGCCTCCCGGTGGTGAGGTCGGAGGCGCTCGGCAAGCTGGGCCCCTCGTTCGGCATCGGCGCCGGCTGCGGCGTCGGCGTCTGCTTCGGCCTCATCGGCGgtaggcaagcgattcgccatccatagccatcacccgcgctcctccttcctcctcctctcgggcaccttcggtagggtt--caacaaggtgttcgcgagggtt-

upper sequence: GRMZM2G105184_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G33040.1 (Glycine max), 5'ss of exon 1
AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtac-----ccttcgccgacgtttactcttcctgctccgagtgtggcggccatagacgagttcacggagcacgattaccaaaccggcgaactggagtgctc
|  || || |||| || ||| |||  | |||||||  ||||||| ||||||||||||||||| ||||||||| | ||| | ||| | |||||  ||||||||   | |     ||||   |   ||   ||     |||| | | |  |       | |   | ||        | | || | |   ||   |     |      
AAGCTTCCGGTGGTGAAGTCCGATCAGTTCGGCAAGGTGGGCCCCGCCTTCGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattcttcaacctttttctctgtacccttcatttgcttcaatttcg--catagttgttaaatttttatgtaatggtt-ctatgtcgattagtaaaaacaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211149859|gb|FL136092.1|FL136092
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211151288|gb|FL136098.1|FL136098
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|60340474|gb|DN207447.1|DN207447
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCTGCCTCATCGGAG                         GTGCAGGCATCGTAGCTGGATTCCCTGGT
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGT
EST: gi|211149861|gb|FL136094.1|FL136094
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211151287|gb|FL136097.1|FL136097
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211282992|gb|FL428456.1|FL428456
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211262272|gb|FL427139.1|FL427139
EST:     CGGCATCGGCGCCGGCTGCGGC-TGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211212154|gb|FL394667.1|FL394667
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148409|gb|FL136077.1|FL136077
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCRTCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211095173|gb|FL400819.1|FL400819
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|113703154|gb|EE680658.1|EE680658
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211298962|gb|FL396164.1|FL396164
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211212175|gb|FL397458.1|FL397458
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148407|gb|FL136075.1|FL136075
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148405|gb|FL136073.1|FL136073
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211151289|gb|FL136099.1|FL136099
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211149854|gb|FL136087.1|FL136087
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211460290|gb|FL454162.1|FL454162
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211116005|gb|FL153563.1|FL153563
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211437175|gb|FL418955.1|FL418955
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211149856|gb|FL136089.1|FL136089
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211277574|gb|FL428413.1|FL428413
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211116003|gb|FL153561.1|FL153561
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148401|gb|FL136069.1|FL136069
EST:     CGGCWTCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCMTCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211496815|gb|FL406828.1|FL406828
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148412|gb|FL136080.1|FL136080
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211348623|gb|FL403652.1|FL403652
EST:     CGGCATCGGCGCCGGCTGCGGCGTGG-TCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211514623|gb|FL436243.1|FL436243
EST:     CGGCATCGGCGCTGGYTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTMCAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148402|gb|FL136070.1|FL136070
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211011284|gb|FL388944.1|FL388944
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211149858|gb|FL136091.1|FL136091
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211149862|gb|FL136095.1|FL136095
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211149852|gb|FL136085.1|FL136085
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148406|gb|FL136074.1|FL136074
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211339493|gb|FL422739.1|FL422739
EST:     GGCATCGGCGCCAGGCTGCGGC-TGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: GGCATCGGCGCT-GGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148404|gb|FL136072.1|FL136072
EST:     CGGCATCGGCGCCGGCTGCGGCTTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211296716|gb|FL392413.1|FL392413
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211373887|gb|FL387111.1|FL387111
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148408|gb|FL136076.1|FL136076
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211116006|gb|FL153564.1|FL153564
EST:     CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG
EST: gi|211148410|gb|FL136078.1|FL136078
EST:     CGGCATCGGCGCCGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAG                         GTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAACTGGGGTTTGGAGCTG
genomic: CGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 106

AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTGGAGCTGGATGTGGAATAGGAATAGGTTTTGGTTACGGCTTTGGAAAAGG


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 176

AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTGGAGCTGGATGTGGAATAGGAATAGGTTTTGGTTACGGCTTTGGAAAAGG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 170

AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTGGAGCTGGATGTGGAATAGGAATAGGTTTTGGTTACGGCTTTGGAAAAGG


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 109

AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtaccc ... tcattaacagGTGCAGGCATCGGAGCTGGATTCCCTGGTTTACAATTGGGGTTTGGAGCTGGAGCTGGATGTGGAATAGGAATAGGTTTTGGTTACGGCTTTGGAAAAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtacccttcgccgacgtttactcttcctgctccgagtgtggcggccatagacgagttcacggagcacgattaccaaaccggcgaactggagtgctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgctcc