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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCAAACATGGTGGGATTAGGGAAGGAAGCTATTGCAGCAATGTCGGCTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtcaatggcaccttgacaaaacattttcttatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaag

Basic information

species Zea mays
transcript GRMZM2G104166_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104166_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g45670.1 (Oryza sativa), 5'ss of exon 6
GAAGTCAAACATGGTGGGATTAGGGAAGGAAGCTATTGCAGCAATGTCGGCTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtcaatggcacc--ttgacaaaacattttcttatcctccaggttcctttattcatgt-----ttactaatcattcct-----gttttggctttaag
 ||||||| |||||| |||||||||||||||||| ||||||||||| | || |||||||||||||| ||| | ||||| |||||||| || |||||  |||||| | | |     |||  || ||   |||||||||  | |  || | |  |  ||| || |     |||   ||   | ||     || |||   | |||
TAAGTCAAGCATGGTAGGATTAGGGAAGGAAGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGgtaaccatgagctatacccgttaacgttacattttctggtgcatcatgctattgcatttatctgaaaattatatatagctgctaatcagtcttgctctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211163115|gb|FL067004.1|FL067004
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: gi|5847057|gb|AW000136.1|AW000136
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: gi|6095746|gb|AW120413.1|AW120413
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGAATACTTGACAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAG-ATACTTGACAA
EST: gi|211163114|gb|FL067003.1|FL067003
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: gi|5915494|gb|AW053135.1|AW053135
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: gi|5895761|gb|AW037007.1|AW037007
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: gi|211163116|gb|FL067005.1|FL067005
EST:     CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG                         GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA