Sequence
atgc intronic sequence ATGC exonic sequenceATTGCAGGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaagctaagaaattcacttgcttggtgtttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104147_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 7
ATTGCAGGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaa-cccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaagctaagaa--attcacttgcttggtgtt-tg--
||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||| | || ||| |||| ||| || | | || || | | | || || |||||| | ||||||| ||| ||| || |||| | ||
-------GCATTGGACACCTTTAATACAGCAGTTGTCTCACCAATATATTACGTGATGTTTACTTCACTAACAATTTTAGCCAGTGTGATAATGTTTAAGgtaagctttttctatcacttccattaggcatt-----cagcccttatacactcaac-tttcttgttgcagaaagctatgaacaatttttttttttggcttaatgtg
upper sequence: GRMZM2G104147_T04 (Zea mays), 5'ss of exon 1
lower sequence: AT1G71900.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTGCAGGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaa-gctaagaaattcacttgcttggtgtttg------
|| || |||||||| |||||||| |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||||| || | || || | | | | || ||| ||| ||| | || | | | || ||||| | ||| ||||
-------GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGgtatcct------ctgctcccacaa------aatgt-atctatggttgtatgagggtgttgtttcagactttcagtacatgattcaaatcgttgtggttttgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101391081|gb|EB817474.1|EB817474EST: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG GATTGGGGAC-ATCAAAATCCAACACAAATTTGT-ACAGAGATGTGTGGCT
genomic: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGG-ACCATCAAAATCCAACACAAATT-GTTACAGAGATGTGTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGCAGGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaagctaagaaattcacttgcttggtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaag