1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTGCCACGCCGCCAAGGGGCCCGGGTACGCCACGCCGCTGGAGGCCATGGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgcttcctctgcctcaccatgcctgtaggactgtagccaggaggatcctgctgcggacatatggggacgtgcgcgtagatcttggatgattagtc...
species | Zea mays |
transcript | GRMZM2G103812_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAEST: gi|211184169|gb|FL127370.1|FL127370
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAEST: gi|31354133|gb|CD438490.1|CD438490
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAEST: gi|29167955|gb|CB411215.1|CB411215
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: AAGCTCGTCTACGTCACCTGCGTCTACAACG GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAEST: gi|5567017|gb|AI881928.1|AI881928
genomic: AAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: GCAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG GCACTGGAATTAACAAGCCGAATTACCTTGCGACGGGGGATTTGGATCCCAEST: gi|67031397|gb|CO460146.1|CO460146
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: CCCAGGGAGTAGCTCGTCTACGTCACCTGCGTCTACAACG GCACCGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: CCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCCACGCCGCCAAGGGGCCCGGGTACGCCACGCCGCTGGAGGCCATGGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgcttcctctgcctcaccatgcctgtaggactgtagccaggaggatcctgctgcggacatatggggacgtgcgcgtagatcttggatgattagtc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC