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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGAGTCTCTCACCTGCTGGCGGAGGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccccgcctcccccctcgatctccctcctccaattccttctgctgctgcgactgaatcgaattgctccactgctactaatctctatactactac...

Basic information

species Zea mays
transcript GRMZM2G103430_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211409108|gb|FK978703.1|FK978703
EST:     GGCGGCCCCCAAAAGCCAAATTCCCCAGCCCACACCACCTCCACACTCCA                         GGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAACCG
genomic: GGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccc ... cctggtctagGGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAGCCG
EST: gi|211409115|gb|FK978710.1|FK978710
EST:     GGCGGCCCCCAAAAGCCAAATTCCCCAGCCCACACCACCTCCACACTCCA                         GGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAACCG
genomic: GGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccc ... cctggtctagGGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAGCCG
EST: gi|211411663|gb|FK978721.1|FK978721
EST:     GGCGGCCCCCAAAAGCCAAATTCCCCAGCCCACACCACCTCCACACTCCA                         GGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAACCG
genomic: GGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccc ... cctggtctagGGTTAGGGTTTGCTGTCGGCGATGTCGGATCGGCAGCCGTCGGAGGAGCCG
EST: gi|211409116|gb|FK978711.1|FK978711
EST:     GGCGGCCCCCAAAAGCCAAATTCCCCAGCCCACACCACCTCCACACTCCA                         GGTTAGGGTTTGCTGTCGGCGAT
genomic: GGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccc ... cctggtctagGGTTAGGGTTTGCTGTCGGCGAT
EST: gi|211411666|gb|FK978724.1|FK978724
EST:     GGCGGCCCCCAAAAGCCAAATTCCCCAGCCCACACCACCTCCACACTCCA                         GGTTAGGGTTGGCTGTCGGCGATGTC
genomic: GGCGGCCCCCAAAAGCCAAATTCCCCAACCCACACCACCTCCACACTCCAgtaagcaccc ... cctggtctagGGTTAGGGTTTGCTGTCGGCGATGTC