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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgactgacgaaaatcactggcgtctccctgtccctgtgttgtgcgacgcgttgcattcctgatgcgcgagcaacccaattgctggcctcacctc...

Basic information

species Zea mays
transcript GRMZM2G103047_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103047_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g12600.2 (Oryza sativa), 5'ss of exon 1
AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac--tgacgaaaatc-actggcgtctcc---ctgtccctgtgttgtgcgacgcgttgcattcctgatgcgcgagcaacccaattgctggcctcacctc
 | ||| | ||| ||||||||||  |||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   | |  | ||    ||| | || |||| ||    || |   |  ||| | ||  | | | ||   | ||  | ||   |    ||   ||          
GGCGGAGGAGGGTGGAGGGCTCGCGAAGACGCTGCAGCTCGGCGCGCTCTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaggcggctttaactttgatccattgccgtcgccaatttggcggagatttgggggagac-taggatgtttcatttgggatttattacatg--tgattctgt---

upper sequence: GRMZM2G103047_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ27053 (Selaginella moellendorffii), 5'ss of exon 1
AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgactgacgaaaatcactggcgtctccctgtccctgtgttgtgcgacgcgttgcattcctgatgcgcgagcaacccaattgctggcctcacctc
  | ||| | ||  | | | |  |    || || |||||||| |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||     |  ||        ||  |       |   |      | || |         | ||| | || | |      |    || |  ||   || |   
GCAAGAATCCGGCAGCGCGATGATGCGCACACTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttcttctcgttttcttttctccaccttagctaggatcttctcttgttttctccatgcatgctactttctaactagaacttgtgatttctcag-

upper sequence: GRMZM2G103047_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ05868 (Selaginella moellendorffii), 5'ss of exon 1
AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgactgacgaaaatcactggcgtctccctgtccctgtgttgtgcgacgcgttgcattcctgatgcgcgagcaacccaattgctggc-ctcacctc----
  | ||| | ||  | | | |  |    ||||| |||||||| |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||       | ||       ||  |  | | || |   || |   | |         |||  |||   ||||    || ||    |  || |  || |  ||    
GCAAGAATCCGGCAGCGCGATGATGCGCACGCTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgc------attgtttcttctcgttttcttttctcca-ccatagctaggatcttttcttgttttctccatgcat--gctactttctaactagaacttatttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148999234|gb|EE036154.2|EE036154
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211274928|gb|FL373271.1|FL373271
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|71427134|gb|DR808184.1|DR808184
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211040276|gb|FL427900.1|FL427900
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|60349997|gb|DN216970.1|DN216970
EST:     CTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: CTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|21760182|gb|BQ635723.1|BQ635723
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|78125801|gb|DV544185.1|DV544185
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|76916104|gb|DV166241.1|DV166241
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211501651|gb|FL380183.1|FL380183
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211254579|gb|FL410492.1|FL410492
EST:     CGGGCTCTGGTACCTCTTCAACATCTACTTNCA-CATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: CGGGCTCTGGTACCTCTTCAACATCTACTT-CAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211303195|gb|FL395154.1|FL395154
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAAC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAAC
EST: gi|74235578|gb|DT643492.1|DT643492
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACTACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211047986|gb|FL382472.1|FL382472
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211330230|gb|FL404919.1|FL404919
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211020375|gb|FL416545.1|FL416545
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTG
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTG
EST: gi|50331502|gb|CO526628.1|CO526628
EST:     TCGGGCTCTGGTACCTCTTCAAC--CTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|78082339|gb|DV510751.1|DV510751
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|149105847|gb|EE291446.2|EE291446
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|149072472|gb|EE160748.2|EE160748
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211325790|gb|FL398339.1|FL398339
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCA
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCA
EST: gi|76018097|gb|DT945267.1|DT945267
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|149070713|gb|EE159128.2|EE159128
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|71444331|gb|DR825381.1|DR825381
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211069261|gb|FL419934.1|FL419934
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|149094831|gb|EE180400.2|EE180400
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211476303|gb|FL383240.1|FL383240
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|78078232|gb|DV506647.1|DV506647
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|26457500|gb|CA829083.1|CA829083
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|31358649|gb|CD443006.1|CD443006
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|78121642|gb|DV540026.1|DV540026
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|50334494|gb|CO529620.1|CO529620
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|149007367|gb|EE040217.2|EE040217
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211071293|gb|FL399387.1|FL399387
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: gi|211063599|gb|FL411764.1|FL411764
EST:     TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG                         GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 277

AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 379

AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 331

AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGAAGCGGGGGGAGGGCTCGTCAAGACGCTGCAGCTGGGGTCGCTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgactgacgaaaatcactggcgtctccctgtccctgtgttgtgcgacgcgttgcattcctgatgcgcgagcaacccaattgctggcctcacctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgtcc