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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCCGTTCCGTCGCCGCCGCGCGCCTCGGAGAAGAGATAGAGGCGGCCGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccacctccctcgattcgattggctctaactacggaaccctaccctaggttcgatttgatctgtggattttgggggattttgtttag

Basic information

species Zea mays
transcript GRMZM2G102471_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152240|gb|DY397029.1|DY397029
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|18963462|gb|BM660448.1|BM660448
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211240449|gb|FL033371.1|FL033371
EST:     CGCTGCATCGACCCCGCGCCACCTNCGCCTGCMTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211340925|gb|FL033475.1|FL033475
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|32915121|gb|CF019933.1|CF019933
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|19057772|gb|BM736439.1|BM736439
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|20300917|gb|BQ163860.1|BQ163860
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211238217|gb|FL033363.1|FL033363
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211340936|gb|FL033486.1|FL033486
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAANAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211235980|gb|FL033352.1|FL033352
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|15005359|gb|BI325426.1|BI325426
EST:     TCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211343318|gb|FL033490.1|FL033490
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCSMCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211249394|gb|FL033439.1|FL033439
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCCTGAAGGAGCTGAAGG
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCC-TGAAGGAGTTGAAGG
EST: gi|211244923|gb|FL033410.1|FL033410
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211340938|gb|FL033488.1|FL033488
EST:     CGCTGCATCGACCCCGCGCNACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211242691|gb|FL033398.1|FL033398
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|6826976|gb|AW330619.1|AW330619
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GNTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|20301187|gb|BQ164130.1|BQ164130
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211251617|gb|FL033447.1|FL033447
EST:     CGCTGCATCGACCCCGCGCCACCKSCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211340933|gb|FL033483.1|FL033483
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211240452|gb|FL033374.1|FL033374
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|14701145|gb|BI233563.1|BI233563
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211340937|gb|FL033487.1|FL033487
EST:     CGCTGCATCGACCCCGCGCCACCTCCGCCTGNCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|211247161|gb|FL033426.1|FL033426
EST:     CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATG
genomic: CGCTGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATG
EST: gi|78084134|gb|DV512527.1|DV512527
EST:     TGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|78105419|gb|DV523837.1|DV523837
EST:     TGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCG                         GGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TGCATCGACCCCGCGCCACCCCCGCCTGCCTCCCCCGGCACCGATCGgtacggccac ... ttttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA