Sequence
atgc intronic sequence ATGC exonic sequenceCAGAATATGTCTTACAGGGGGCAAAGAAGTTAATAATGCTATAGTGAGCAGTATACAGGACCTGGCAAAGTCATTCTCAAATTACCATGATGAGGTCCTGgtatgtctgccagttgtctgatgtaaacttatagtgctaaattatcatgtaatacttggcgcaaaatgttctgattattcaccagttattatgtacttgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G102196_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g06270.1 (Oryza sativa), 5'ss of exon 3
CAGAATATGTCTTACAGGGGGCAAAGAAGTTAATAATGCTATAGTGAGCAGTATACAGGACCTGGCAAAGTCATTCTCAAATTACCATGATGAGGTCCTGgtatgtctgccagttgtctgatgtaaacttata--gtgctaaattatcatgtaatacttggcgcaaaatg--ttctgattattcaccagttattatgtacttgg
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---CCTATGTCTTACAGGAGGGAAAGAAATCAATAATGCGATCATGAGCAGTATACAGGACTTGGCAAAATCATTCTCAAATTACCATGATGAAGTCCTGgtacattt-tgggttgtctcttgcacttttattctatgctgagtattgaatcagtggatggataaatataacatgtaactctttgcaaa--aattcattcctg-
upper sequence: GRMZM2G102196_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0067g03850.t01 (Vitis vinifera), 5'ss of exon 5
CAGAATATGTCTTACAGGGGGCAAAGAAGTTAATAATGCTATAGTGAGCAGTATACAGGACCTGGCAAAGTCATTCTCAAATTACCATGATGAGGTCCTGgtatgtctgccagttgtctgatgtaaacttatagtgctaaattatcatgtaatacttggcgcaaaatgttctgattattcaccagttattatgtacttgg----
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---GCTTTGTCTTACTGGAGGAAAAGAAGTTCATAATGCCATAGTGAGCAGTATACAGGACCTTGGAAAGGCTTTTTCAAGATATGAAGATGAAGTACTGgtaaagatgtgaacctcttgac-tacacttttaagatttcattaaca---aatgctcaaacttgaataccccagccaagattaaattgctgaggatgcaataatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60347043|gb|DN214016.1|DN214016EST: ATGAGGTCCTG GTGAAACGTGAAGAGTTACTTCAGTTCACACAAAGTGCCATTTCAGGTCTA
genomic: ATGAGGTCCTGgtatgtctgc ... atacatgtagGTGAAACGTGAAGAGTTACTTCAGTTCACACAAAGTGCCATTTCAGGTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGAATATGTCTTACAGGGGGCAAAGAAGTTAATAATGCTATAGTGAGCAGTATACAGGACCTGGCAAAGTCATTCTCAAATTACCATGATGAGGTCCTGgtatgtctgccagttgtctgatgtaaacttatagtgctaaattatcatgtaatacttggcgcaaaatgttctgattattcaccagttattatgtacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG