1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAGgtacgcgcgccgatcagatgacagatgcccccctccgcgtgacgcccatcgcgtcagtacctgcccgtgagcctaggcctagcatagactgatccacgccagcggtttctgcgagaggagcgctttggtctcagtgatgggttctgacggaaccgggtgcttttggtggcgcag
species | Zea mays |
transcript | GRMZM2G101698_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAATGCCCCAACATCGGCGAGEST: gi|67023528|gb|CO452277.1|CO452277
genomic: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
EST: CTGCGGGATTCCATCGGCGAGCTCAA-CTCAACACCGTCTGCGTCGAGGCACAATGCCCCAACATCGGCGAGEST: gi|149001281|gb|EE038564.2|EE038564
genomic: CTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
EST: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAGEST: gi|78112107|gb|DV530503.1|DV530503
genomic: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
EST: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAGEST: gi|71324730|gb|DR799071.1|DR799071
genomic: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
EST: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
genomic: GCGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGCGCAGGGGGAGAAGTACGCTCGCCTGCGGGAGTCCATCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCACAGTGCCCCAACATCGGCGAGgtacgcgcgccgatcagatgacagatgcccccctccgcgtgacgcccatcgcgtcagtacctgcccgtgagcctaggcctagcatagactgatccacgccagcggtttctgcgagaggagcgctttggtctcagtgatgggttctgacggaaccgggtgcttttggtggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA