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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgtacgttgcctagctagccgcgcgtcgtctctctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgtacggaagtatcag...

Basic information

species Zea mays
transcript GRMZM2G101499_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101499_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g44860.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgtacgttgcctagctagccgcgcgt-----cgtctc-tctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgtacggaagtatcag
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |     |||   || | |  || |      ||| ||  |  | |   |    || || | |    |  ||       | |||  |  ||   |   |     
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCGCCTCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtaagc-tactgctccgccatcaccgtgctacagcgtgtcgccatgattcgctgtacttgctttcttgaattctttctctcgccatgaccggtctcgggat-----

upper sequence: GRMZM2G101499_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgtacgttgcctagctagccgcgcgtcgtc-tctctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgt-acggaagtatcag
||||||||||||||||||||||||| |||||||  ||| |||| ||| ||  ||||  | ||| |||   |   ||||| ||||||||||||||||||||||      |  || |   | |   | |  |||| |   | ||   |   |  | | || |         |     |       |   | ||     || |  
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatca--ttgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt

upper sequence: GRMZM2G101499_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G14610.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgtacgttgcctagctagccgcgcgtcgtc------tctctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgtacggaagtatcag
||||||| ||||||||||||||||| |||||||  ||| |||| ||| ||  ||||  | ||| ||||  |   ||||| ||||||||||||||||||||||      | ||| ||| | |   | |  ||||      |   ||  ||         |||   |   |  ||  |     | | |   ||  ||  |  | |   
AGCACTATCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGCTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggtgc-tagtttgttcctcaccgtcggaaattgcatcaatcattgagttcagctccctcgggggc--actttcgtctttttacacacctaccttt---

upper sequence: GRMZM2G101499_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0021g02300.t01 (Vitis vinifera), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtac--gtacgttgcctagctagccgcgcgtcgtctctctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgtacggaagtatcag
|||| |||||||||||||||||||||||||||| |||| |||| |||||    |||  | ||| |||   |   |||||||||||||| ||||| ||||||| |  | |  || || |   | ||     ||    |      || | |||  ||   |   || ||    ||  || ||| | ||       ||| |    
AGCATTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCTACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaaattaccaaaacacccttat-tcacaacgaaacttccagctatttaatctaataaaaaataaaatcaacgcaaaccaaaattcaaagcaagt-