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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATGGCGAGCCTGTCGTCGCCGAGTCTCCTCTCTTCCTTCCTCGGCGACCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgcccgccccatcttccgcactgctccgcggttgtgcccctggtttcatctcgtcggcccagagcagagttcgctgagatggctcttccttgcag

Basic information

species Zea mays
transcript GRMZM2G101438_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101438_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g52420.1 (Oryza sativa), 5'ss of exon 1
CCCATGGCGAGCCTGTCGTCGCCGAGTCTCCTCTCTTCCTTCCTCGGCGACCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgcccgccccatcttc----cgcactgctccgcg---gttgtgccc-ctggtttcatctcgtcggcccagagcagagttcgctgagatggctc-ttccttgcag---------------------------------------------------
|||||||||| |  |||||||||| | || ||||| |||||||||||||||||||||     | |||        |  || ||||||   || |  |||||||   ||||  |||   |||    | | |  |||||||   |  | || | ||   | || |||| ||   |    | |  | |||||     || | ||    || |                                                   
CCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGgtaggcgcccttcccccattcttctctcgcaactccgcgcgcgcggcgcgcactccctccacctcg-cgaatcgcgactgcctccgctgccccagcgcgttagcggcgggcaagagtttactgaggctgctccggctccgggtgggctctctttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227811|gb|FL170954.1|FL170954
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|148995508|gb|EE034697.2|EE034697
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|211227812|gb|FL170955.1|FL170955
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|76912468|gb|DV164746.1|DV164746
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|78075681|gb|DV504115.1|DV504115
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|101399011|gb|EB821378.1|EB821378
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|78082005|gb|DV510417.1|DV510417
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|71436246|gb|DR817296.1|DR817296
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
EST: gi|76289409|gb|DV028977.1|DV028977
EST:     CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAG                         GCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG
genomic: CCGCCTCGCACTCTCCACTAGGCCTCTCCTTCTCCGCTCCGCTGTCCCAGgtacctgccc ... ttccttgcagGCAGCAGGCGGCTGGCGTATCAAGCAACGAGAACGCTATGCAACTTGGTGG