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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACAGGTCCCCGCGCTCCGACGGGGAGCACTGCGCGTGCGGTGGGTCACGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctgagcctttgtttcttttccccgatcacagagagagatctctgcggcgggtgtgaacgacatgggggttctcgcag

Basic information

species Zea mays
transcript GRMZM2G101217_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50325602|gb|CO520728.1|CO520728
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211531113|gb|FL426903.1|FL426903
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|76910427|gb|DV163865.1|DV163865
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|93012540|gb|EB638060.1|EB638060
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|50336106|gb|CO531232.1|CO531232
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|148959299|gb|EE010710.2|EE010710
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211153475|gb|FL406036.1|FL406036
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211057983|gb|FL426573.1|FL426573
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211269212|gb|FL410574.1|FL410574
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211209580|gb|FL394645.1|FL394645
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCC-ATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|89250708|gb|DY622494.1|DY622494
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|101391071|gb|EB817469.1|EB817469
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211491486|gb|FL425979.1|FL425979
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|19436955|gb|BM953365.1|BM953365
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|37417541|gb|CF646424.1|CF646424
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|50337135|gb|CO532261.1|CO532261
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211063350|gb|FL405207.1|FL405207
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71448748|gb|DR829798.1|DR829798
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211197467|gb|FL425782.1|FL425782
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGT---ACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211511752|gb|FL412067.1|FL412067
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211164475|gb|FL391064.1|FL391064
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211428747|gb|FL388358.1|FL388358
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211524044|gb|FL387968.1|FL387968
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCACCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|74245283|gb|DT653197.1|DT653197
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211079207|gb|FL387329.1|FL387329
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71299666|gb|DR785841.1|DR785841
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71312573|gb|DR792811.1|DR792811
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211209713|gb|FL401773.1|FL401773
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211054342|gb|FL401189.1|FL401189
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211428657|gb|FL384948.1|FL384948
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211463727|gb|FL386698.1|FL386698
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|148960597|gb|EE011219.2|EE011219
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211085712|gb|FL420035.1|FL420035
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCC-ATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|93012641|gb|EB638161.1|EB638161
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|93012306|gb|EB637826.1|EB637826
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71303088|gb|DR787655.1|DR787655
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|76281532|gb|DV021100.1|DV021100
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCACAGGTCCCCGCGCTCCGACGGGGAGCACTGCGCGTGCGGTGGGTCACGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctgagcctttgtttcttttccccgatcacagagagagatctctgcggcgggtgtgaacgacatgggggttctcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT