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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGCGCTGTTCGTTCTAGGGTTTGTGTCCCTCTTTACGGGACACGTGGTCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgttgcagacttgactgctgtactgtctaattccacaaattttgtcgttgcgtggtctcttccgtgttatagcctgatagaagtgaaagaagaa...

Basic information

species Zea mays
transcript GRMZM2G101181_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 1
AACCGCGCTGTTCGTTCTAGGGTTTGTGTCCCTCTTTACGGGACACGTGGTCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgttgcagacttgactg--ctgtactgtctaattccacaaattttgtcgttgcgtggtctcttccgtgttatagcctgatagaagtgaaagaagaa
||| ||||||||||| |||||||||||||||||||| ||||||||| | || || ||||| |||||| | |||||||| || || |||||| | || ||||||||||  ||   || |    |  ||||||||| |||||  ||    ||| |||   |    |    | |  || |||  |   |  ||  | |  ||   
AACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGgtaattttctgacaacctagaaggtctgtactgtataatttgacgggatttatcggcaccacttagaattcacgtgatattcgagtgcaataggagtaaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415882|gb|FL280505.1|FL280505
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|211413345|gb|FL280504.1|FL280504
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|32865075|gb|CF004757.1|CF004757
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|67022216|gb|CO450965.1|CO450965
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|37418679|gb|CF647011.1|CF647011
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|148935747|gb|EC879791.2|EC879791
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: gi|211415883|gb|FL280506.1|FL280506
EST:     TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG                         CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG