1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGACTCGTCCGGTCGTCCCTCAGCACTGTGCTTGGCGGACGCAGGACAAGACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgctctccagtgcactgcaattcgctcggaatcttccctgaatgcttctctgtggggtcgcag
species | Zea mays |
transcript | GRMZM2G100260_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTCCTCGTCEST: gi|211144465|gb|FL048076.1|FL048076
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCEST: gi|211144466|gb|FL048077.1|FL048077
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCEST: gi|211144461|gb|FL048072.1|FL048072
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCEST: gi|89248178|gb|DY619964.1|DY619964
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCEST: gi|211144462|gb|FL048073.1|FL048073
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCEST: gi|14701176|gb|BI233594.1|BI233594
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: GACACAGGATGAGGGCTG-GGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTGCG-GGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTEST: gi|211144469|gb|FL048080.1|FL048080
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGT-CGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGT
EST: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACTCGTCCGGTCGTCCCTCAGCACTGTGCTTGGCGGACGCAGGACAAGACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgctctccagtgcactgcaattcgctcggaatcttccctgaatgcttctctgtggggtcgcag
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