Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTCGCAGAGAGCACGTCGTGGGCTTCACTCGGCGTATCCGAACGCCTCGCGTCCGCCCTTTGCAGTGCCGGGCTCTCGAGGCCTTCCCTTGTCCAGgtaaggggtccgctcgcttcagctacaacacacgccatatgttcgacgaaatgttggacctcctgtgcacgtcttatgcctgtttaacatgagcagttca...

Basic information

species Zea mays
transcript GRMZM2G100043_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100043_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g21520.1 (Oryza sativa), 5'ss of exon 1
ATTCTTCGCAGAGAGCACGTCGTGGGCTTCACTCGGCGTATCCGAACGCCTCGCGTCCGCCCTTTGCAGTGCCGGGCTCTCGAGGCCTTCCCTTGTCCAGgtaaggggtccgctcgcttcagctacaacacacgccatatgttcgacgaaatgttggacctcctgtgcacgtc--ttatgcctgtttaacatgagcagttca-
 ||||  |  ||||||||||||||||  || ||||||||||| || |||||||| ||||| ||   | | || || ||| |||||||||| ||||| |||||  | ||   ||||   |  | || ||  || || |  || ||||| |||||   ||  ||  ||||    |  || ||| | |||   |  |   ||||| 
CTTCTCGGAGGAGAGCACGTCGTGGGAGTCCCTCGGCGTATCGGACCGCCTCGCCTCCGCGCTGCACGGGGCGGGCCTCGCGAGGCCTTCGCTTGTTCAGgt--gtggcttgctccacttggata-aatgcatgctacgtgctcgacaaaatgcctgagttcgcgtgctttgcatttctgcttatttggaaccaaatgttcag