Sequence
atgc intronic sequence ATGC exonic sequenceTAGGAGGAAGAACCCGAGCAACCGAGCCACAGGGAGGAGGAGGAGATGGGCAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatctgcccgtggtgggtttctcgcgggctccccctctcttgtcgctgcttgtttggatctcagctgcggcgcttcgaactccatcaaattttga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g02810.1 (Oryza sativa), 5'ss of exon 1
TAGGAGGAAGAACC-CGAGCAACCGAGCCACAGGGAGGAGGAGG-AGATGGGCAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatc--tgcccgtggtgggtttctcgcgggctccccctctcttgtcgctgcttgttt--ggatctcagctgcggcgcttcgaactcca-tcaaattttga
|||| ||| || | | || | || ||||||| || |||||||||||||||| || || |||||||||||||||||||| |||||||| |||||||| | || | || | | | ||||| | ||| | ||| || || || || |||| | || | | | || ||| | || |
--AGAGGCAGACCCACCACCATCAACAACATCAGGAGGAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGgtattcttcgcttcctcggattgatttcttgggggatttcccg-----gtgattgttttcttaaggatgctggttgttgggatgggatctcgggttggatgatct
upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g02830.2 (Oryza sativa), 5'ss of exon 1
TAGGAGGAAGAACCCGAGCAACCGAGCCACAGGGAGGAGGAGG-AGATGGGCAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatc---tgcccgtggtgggtttctcgcgggctccccctctcttgtcgctgcttgtttggatctcagctgcggcgcttcgaactcca-tcaaattttga
|| | | | | ||| || |||| || || |||||||||||||||| || || ||||||||||||||||| || |||||||| |||||||| | || | | || | | ||||| | ||| | ||| | | | | || || |||| | || | | | || ||| | || |
-GACAGACCCACCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGgtattcttcgcttcctcggatttgatttcttgggggatttcccggtg--attgtt--ttcttgggatgctggttgttgggatgggatctcgggttggatgatctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148932539|gb|EC876345.2|EC876345EST: CAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAG CCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGAT
genomic: CAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatct ... gttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGGAGGAAGAACCCGAGCAACCGAGCCACAGGGAGGAGGAGGAGATGGGCAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatctgcccgtggtgggtttctcgcgggctccccctctcttgtcgctgcttgtttggatctcagctgcggcgcttcgaactccatcaaattttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA