1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgcacgcgcgctccggccagccttgtcctgccctgcatgcatctgatctatgtgtagcccgcaacacgcatcccccccccaaatgaacgatatt...
species | Zea mays |
transcript | GRMZM2G099522_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|91875363|gb|EB405320.1|EB405320
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: CAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211251102|gb|FL353279.1|FL353279
genomic: CAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211019213|gb|FL365161.1|FL365161
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCS-CCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211507728|gb|FL332392.1|FL332392
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCACCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211522292|gb|FL320500.1|FL320500
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211193049|gb|FL326929.1|FL326929
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211181487|gb|FL345836.1|FL345836
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211270547|gb|FL358789.1|FL358789
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCN-CCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGEST: gi|211497893|gb|FL334571.1|FL334571
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAG
EST: ATCATCTTCTCCGGCCGCGGGCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAWGTEST: gi|211265829|gb|FL364905.1|FL364905
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|31360882|gb|CD445239.1|CD445239
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211186311|gb|FL345877.1|FL345877
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211033671|gb|FL344496.1|FL344496
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211050317|gb|FL359421.1|FL359421
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211033704|gb|FL345779.1|FL345779
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211093425|gb|FL320646.1|FL320646
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211362510|gb|FL346909.1|FL346909
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211137848|gb|FL308432.1|FL308432
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGG-CSCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211255185|gb|FL327779.1|FL327779
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211293139|gb|FL323373.1|FL323373
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211156084|gb|FL357770.1|FL357770
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211437459|gb|FL316489.1|FL316489
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCC-CCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211519811|gb|FL338570.1|FL338570
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211309835|gb|FL318646.1|FL318646
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211514414|gb|FL314334.1|FL314334
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCSSCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|7145381|gb|AW506862.1|AW506862
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211495608|gb|FL359816.1|FL359816
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211505719|gb|FL354388.1|FL354388
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: TCATCTTCTCCGGCCGCGGCS-CCTCTTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211260958|gb|FL364885.1|FL364885
genomic: TCATCTTCTCCGGCCGCGGCCGCCTCTTT-GAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211393335|gb|FL307381.1|FL307381
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211004723|gb|FL346555.1|FL346555
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211172109|gb|FL336630.1|FL336630
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211004724|gb|FL346556.1|FL346556
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211224663|gb|FL333921.1|FL333921
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211108679|gb|FL329457.1|FL329457
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGSCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211380766|gb|FL330020.1|FL330020
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211534881|gb|FL340869.1|FL340869
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|89761505|gb|DY689494.1|DY689494
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: CAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211208341|gb|FL339680.1|FL339680
genomic: CAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGTEST: gi|211438203|gb|FL348383.1|FL348383
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgcacgcgcgctccggccagccttgtcctgccctgcatgcatctgatctatgtgtagcccgcaacacgcatcccccccccaaatgaacgatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc