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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgcacgcgcgctccggccagccttgtcctgccctgcatgcatctgatctatgtgtagcccgcaacacgcatcccccccccaaatgaacgatatt...

Basic information

species Zea mays
transcript GRMZM2G099522_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099522_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g11614.1 (Oryza sativa), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgcacgcgcgctccggccagccttgtc-ctgccctgcatgcatctgatctatgtgtagcc-cgcaacacgcatcccccccccaaatg-aacgatatt---
|||||||||| |||||||| || ||  | |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||     | |     |   ||| |   | | | |||      |    || ||   | | |||  |||| ||        |   | || |  ||  | ||    
TCAAGAAGGCCTACGAGCTCTCCCTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTCGAGTTCTCCAGCTCATCATGgtacgtatagcac-----caaaccaacgccgccgccgccgccggcgtgcttgttccg-gcgcagcagcgcatcatcatcgatcgatctaagtctaataagataatc

upper sequence: GRMZM2G099522_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0010g03900.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgta-cgacgcacgcgcgctccggccagccttgtcctgccctgcatgcatctgatctatgtgtagcccgcaacacgcatcccccccccaaatgaacgatatt-
|||||||||||||||| || ||| || | |||||||| ||||| || |||||||||||||||    | ||    ||||  ||||||| |||   |||  ||||   || || |            ||      |||    |  || ||      || |   || | |  |||||  | |        |    |  | | |  
TCAAGAAGGCGTACGAACTTTCGGTGCTCTGCGACGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacacaggaaaagaaaaagtagaa--aacctaaatttgatacaaacttgcttttcataacacaaaacacaaagcaagagaaaaggaaattgttctct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211425701|gb|FL364979.1|FL364979
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|91875363|gb|EB405320.1|EB405320
EST:     CAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: CAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211251102|gb|FL353279.1|FL353279
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211019213|gb|FL365161.1|FL365161
EST:     ATCATCTTCTCCGGCCGCGGCS-CCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211507728|gb|FL332392.1|FL332392
EST:     ATCATCTTCTCCGGCCGCGGCCACCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211522292|gb|FL320500.1|FL320500
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211193049|gb|FL326929.1|FL326929
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211181487|gb|FL345836.1|FL345836
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211270547|gb|FL358789.1|FL358789
EST:     ATCATCTTCTCCGGCCGCGGCN-CCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAG
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAG
EST: gi|211497893|gb|FL334571.1|FL334571
EST:     ATCATCTTCTCCGGCCGCGGGCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAWGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211265829|gb|FL364905.1|FL364905
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|31360882|gb|CD445239.1|CD445239
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211186311|gb|FL345877.1|FL345877
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211033671|gb|FL344496.1|FL344496
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211050317|gb|FL359421.1|FL359421
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211033704|gb|FL345779.1|FL345779
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211093425|gb|FL320646.1|FL320646
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211362510|gb|FL346909.1|FL346909
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211137848|gb|FL308432.1|FL308432
EST:     ATCATCTTCTCCGGCCGCGG-CSCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211255185|gb|FL327779.1|FL327779
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211293139|gb|FL323373.1|FL323373
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211156084|gb|FL357770.1|FL357770
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211437459|gb|FL316489.1|FL316489
EST:     ATCATCTTCTCCGGCCGCGGCC-CCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211519811|gb|FL338570.1|FL338570
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211309835|gb|FL318646.1|FL318646
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211514414|gb|FL314334.1|FL314334
EST:     ATCATCTTCTCCGGCCGCGGCSSCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|7145381|gb|AW506862.1|AW506862
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211495608|gb|FL359816.1|FL359816
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211505719|gb|FL354388.1|FL354388
EST:     TCATCTTCTCCGGCCGCGGCS-CCTCTTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: TCATCTTCTCCGGCCGCGGCCGCCTCTTT-GAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211260958|gb|FL364885.1|FL364885
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211393335|gb|FL307381.1|FL307381
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211004723|gb|FL346555.1|FL346555
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211172109|gb|FL336630.1|FL336630
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211004724|gb|FL346556.1|FL346556
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211224663|gb|FL333921.1|FL333921
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211108679|gb|FL329457.1|FL329457
EST:     ATCATCTTCTCCGGSCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211380766|gb|FL330020.1|FL330020
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211534881|gb|FL340869.1|FL340869
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|89761505|gb|DY689494.1|DY689494
EST:     CAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: CAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211208341|gb|FL339680.1|FL339680
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
EST: gi|211438203|gb|FL348383.1|FL348383
EST:     ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATG                         CATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT
genomic: ATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgca ... gtgccaacagCATGTACAAAACACTCGAGAGATACCGCAGCTCCAACTACTCACAAGAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAGAAGGCGTACGAGCTGTCGCTGTTGTGCGACGCGGAGGTCGCGCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTTGAGTTCTCCAGCTCCTCATGgtacgacgcacgcgcgctccggccagccttgtcctgccctgcatgcatctgatctatgtgtagcccgcaacacgcatcccccccccaaatgaacgatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc