1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGCTAGAATTCGGATCCCTCCCACCACATCCATCCCCTTCCCTTCCCTTCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttcttcccgccgctccctcttccgtctcctgccgccaagcgtgcgccgtacagctcgctctgcacggcgggtcgcgtcttccgctacgtcccgc...
species | Zea mays |
transcript | GRMZM2G099317_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251026|gb|FL007475.1|FL007475
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|148934490|gb|EC878531.2|EC878531
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|76014888|gb|DT942058.1|DT942058
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|71438768|gb|DR819818.1|DR819818
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|148934137|gb|EC878155.2|EC878155
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|74232122|gb|DT640036.1|DT640036
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211248809|gb|FL007474.1|FL007474
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCTTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|149070621|gb|EE159032.2|EE159032
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: CTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251027|gb|FL007476.1|FL007476
genomic: CTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAG ATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAEST: gi|211251030|gb|FL007479.1|FL007479
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttct ... tggacaggagATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCA
EST: TCCCTCGTGCCCCGCCGGNTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251028|gb|FL007477.1|FL007477
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|148959184|gb|EE010639.2|EE010639
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|71310802|gb|DR791706.1|DR791706
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|71438958|gb|DR820008.1|DR820008
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|71298912|gb|DR785451.1|DR785451
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251031|gb|FL007480.1|FL007480
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|76282712|gb|DV022280.1|DV022280
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251033|gb|FL007482.1|FL007482
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251036|gb|FL007485.1|FL007485
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|29945034|gb|CB815435.1|CB815435
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCG-GCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|76280523|gb|DV020091.1|DV020091
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|50333687|gb|CO528813.1|CO528813
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: CGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211248808|gb|FL007473.1|FL007473
genomic: CGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCTTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|211251029|gb|FL007478.1|FL007478
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|50336824|gb|CO531950.1|CO531950
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|76289551|gb|DV029119.1|DV029119
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|71771421|gb|DR969358.1|DR969358
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|148941832|gb|EC886805.2|EC886805
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|87153453|gb|DY398242.1|DY398242
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: GTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|89251320|gb|DY623106.1|DY623106
genomic: GTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|87155664|gb|DY400453.1|DY400453
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCTTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|31406034|gb|CD484766.1|CD484766
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|149108516|gb|EE292817.2|EE292817
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAGEST: gi|37425051|gb|CF650261.1|CF650261
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGGAG
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCC---AGgtacccttct ... tggacagg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCTAGAATTCGGATCCCTCCCACCACATCCATCCCCTTCCCTTCCCTTCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttcttcccgccgctccctcttccgtctcctgccgccaagcgtgcgccgtacagctcgctctgcacggcgggtcgcgtcttccgctacgtcccgc
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