1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCGCCAAGGCCATCCCCAGGCGGCACCGCCCGCTGCCACCGCCCGACGACTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagttagttaagtttcgtcatttttcgcatttcttctagtgatttgtaacggttcaaaagacgggatttaaggcgttcttttacctatagttttg...
species | Zea mays |
transcript | GRMZM2G099101_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|88757083|gb|DY541224.1|DY541224
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|88752247|gb|DY536388.1|DY536388
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCEST: gi|71426408|gb|DR807458.1|DR807458
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGC
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|71769001|gb|DR966938.1|DR966938
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|20208085|gb|BQ134174.1|BQ134174
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATCGGCGCGGTAACTCTTGCAEST: gi|50337315|gb|CO532441.1|CO532441
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|148932216|gb|EC875712.2|EC875712
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|101387306|gb|EB815669.1|EB815669
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|76285583|gb|DV025151.1|DV025151
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCAEST: gi|50334088|gb|CO529214.1|CO529214
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGEST: gi|211231953|gb|FL399561.1|FL399561
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCG
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCEST: gi|148980726|gb|EE027316.2|EE027316
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGG-AAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGC
EST: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGAT CTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
genomic: CTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagtt ... tttgctgcagCTGGGAAGCTTCCGAAGCACAACAATATACATTGGCGCGGTAACTCTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCCAAGGCCATCCCCAGGCGGCACCGCCCGCTGCCACCGCCCGACGACTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagttagttaagtttcgtcatttttcgcatttcttctagtgatttgtaacggttcaaaagacgggatttaaggcgttcttttacctatagttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagacg