1 5' 3' | 2 5' 3' | 3 5' 3' |
TCGGCGCCTGCGAGGACGACTGCTGGATATGGCCGTCCATCACTCAGAGAGCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcccaagccgactctctgttttttttttcaggcgccagaaggctaggggtatacctttctctcagaaaaagttaggatccatgaggattctgaattatattgcctttgattgcag
species | Zea mays |
transcript | GRMZM2G098973_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAG TCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATTEST: gi|78026449|gb|DV494836.1|DV494836
genomic: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcc ... ttgattgcagTCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
EST: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAG TCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATTEST: gi|149059464|gb|EE156949.2|EE156949
genomic: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcc ... ttgattgcagTCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
EST: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAG TCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATTEST: gi|211064755|gb|FL236295.1|FL236295
genomic: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcc ... ttgattgcagTCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
EST: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAG TCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATTEST: gi|4776102|gb|AI665105.1|AI665105
genomic: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcc ... ttgattgcagTCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
EST: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAG TCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
genomic: GCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcc ... ttgattgcagTCGCATCGTGCCGGAGTACAGCTTCTTGGATGCACGCGGATTGGGTGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGCGCCTGCGAGGACGACTGCTGGATATGGCCGTCCATCACTCAGAGAGCTTACCAGGCGGCCGAGATCATTGCCGCGGCCAACGGCGTCAACCGCAGgtgaggtgcccaagccgactctctgttttttttttcaggcgccagaaggctaggggtatacctttctctcagaaaaagttaggatccatgaggattctgaattatattgcctttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA