Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcggatcacgtccccaaccacctcacggatcgattcattccttcattccatcgcattgggtcacttgctgatgctgggcggtgatgcag

Basic information

species Zea mays
transcript GRMZM2G098153_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098153_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g01450.2 (Oryza sativa), 5'ss of exon 1
AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgga-----tcacgtccccaaccacct--cacggatcgattcattccttcattccatcg--cattgggtcacttgctgatgctgggcggtgatgcag
 || || ||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||  ||||||||||    |   |     || | || ||  || ||   ||      |||  |    || | | | ||   |||||  || ||        ||      || |    
GGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGgtaaactataaatatctctcttctccttccgcccggcatcatcagatctagggttttacttcttcttccattgattccctgaacttgcctttctaatgtt----

upper sequence: GRMZM2G098153_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g01450.1 (Oryza sativa), 5'ss of exon 1
AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgga-----tcacgtccccaaccacct--cacggatcgattcattccttcattccatc--gcattgggtcacttgctgatgctgggcggtgatgcag
 || || ||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||  ||||||||||    |   |     || | || ||  || ||   ||      |||  |    || | | | ||   |||||  || ||        ||      || |    
GGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGgtaaactataaatatctctcttctccttccgcccggcatcatcagatctagggttttacttcttcttccattgattccctgaacttgcctttctaatgttaag-

upper sequence: GRMZM2G098153_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcggatcacgtccccaaccacctcacggatcgattcattccttcattccatcgcattgggtcacttgct--gatgctgggcggtg-atgcag-------------------------------------------------------------------
 || || |||||||| || || || || ||| | |||||||| || |||||| | |||||||| |||||||  || || ||||||||||| | ||||||||||  | |  |     || || ||   |        |  | | | || | |||   |     | | |   || ||  |||  |      || |||  |                                                                   
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcc-tgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211168080|gb|FL298958.1|FL298958
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169766|gb|FL298977.1|FL298977
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|76286915|gb|DV026483.1|DV026483
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166407|gb|FL298947.1|FL298947
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169762|gb|FL298973.1|FL298973
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|19272401|gb|BM888657.1|BM888657
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168084|gb|FL298962.1|FL298962
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169774|gb|FL298985.1|FL298985
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168086|gb|FL298964.1|FL298964
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168087|gb|FL298965.1|FL298965
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGATTCGGCCGACCAG                         GTCCCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168089|gb|FL298967.1|FL298967
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169770|gb|FL298981.1|FL298981
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169765|gb|FL298976.1|FL298976
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|32918964|gb|CF023776.1|CF023776
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166416|gb|FL298956.1|FL298956
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|22491340|gb|BU051263.1|BU051263
EST:     TCCACGTTCTTTACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168083|gb|FL298961.1|FL298961
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166410|gb|FL298950.1|FL298950
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166409|gb|FL298949.1|FL298949
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169771|gb|FL298982.1|FL298982
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169769|gb|FL298980.1|FL298980
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCSACTACCACCATAACATGTACGCYTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166412|gb|FL298952.1|FL298952
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|74240762|gb|DT648676.1|DT648676
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168088|gb|FL298966.1|FL298966
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169768|gb|FL298979.1|FL298979
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|87152453|gb|DY397242.1|DY397242
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168090|gb|FL298968.1|FL298968
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166413|gb|FL298953.1|FL298953
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166406|gb|FL298946.1|FL298946
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCCACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|149112627|gb|EE295476.2|EE295476
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|116817472|gb|EC860326.1|EC860326
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168091|gb|FL298969.1|FL298969
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168081|gb|FL298959.1|FL298959
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|101384134|gb|EB814117.1|EB814117
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168094|gb|FL298972.1|FL298972
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169773|gb|FL298984.1|FL298984
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|93015004|gb|EB640524.1|EB640524
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211169763|gb|FL298974.1|FL298974
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|76284328|gb|DV023896.1|DV023896
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|101384548|gb|EB814319.1|EB814319
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168093|gb|FL298971.1|FL298971
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211166417|gb|FL298957.1|FL298957
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|211168092|gb|FL298970.1|FL298970
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCCAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
EST: gi|67011620|gb|CO440369.1|CO440369
EST:     TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAG                         GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG
genomic: TCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 150

AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 143

AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 118

AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 85

AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcgg ... ggtgatgcagGTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG