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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTCTGATGAAGTACTTCCACCCAAACTGTCATATAATTATACTTTTATTGAAACAACATACACTCTCTATACCAACAGCTTTTTAAACTTTGGTCAAgtgagttgtttatatccacactcttctactttgtaaaatcttgtgaatcctacaatagattagctggctgataaatcatttacttccgcag

Basic information

species Zea mays
transcript GRMZM2G097987_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097987_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g26080.1 (Oryza sativa), 5'ss of exon 3
CGTTTCTGATGAAGTACTTCCACCCAAACTGTCATATAATTATACTTTTATTGAAACAACATACACTCTCTATACCAACAGCTTTTTAAACTTTGGTCAAgtgagttgtttatatccac--actcttctactttgtaaaatcttgtgaatcctacaata------gattagctggctg-ataaatcatttacttccgcag
 |||||||||||||||||||| ||  ||||||||   ||||  ||||||  || ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||| ||| ||   | ||  | ||    ||   | | |  |||| |  ||||      |||  |||| |   || | ||| || |||  ||||
TGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACTTTGGACAAgtgagctatttgtatacattgaatcacccaccacttatgttatggacaatcttgtaatatgatacgatatgctgaccatatgattcaatttcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211150925|gb|FL213281.1|FL213281
EST:     TTGAAACAACATACACTCTCTATACCAACAGCTTTTTAAACTTTGGTCAA                         AATGCAGCTCAAGACTCGTTCCATGAAATGCTGAGGTCAAGAG
genomic: TTGAAACAACATACACTCTCTATACCAACAGCTTTTTAAACTTTGGTCAAgtgagttgtt ... acttccgcagAATGCAGCTCAAGACTCGTTCCATGAAATGCTGAGGTCAAGAG
EST: gi|211150924|gb|FL213280.1|FL213280
EST:     GAAACAACATACACTCTCTATACCAACAGCTTTTTAAAACTTGTGGTCAA                         AATGCAGCTCAAGACTCGTTCCATGAAATGCTGAGGTCAAGAG
genomic: GAAACAACATACACTCTCTATACCAACAGCTTTTT-AAACTT-TGGTCAAgtgagttgtt ... acttccgcagAATGCAGCTCAAGACTCGTTCCATGAAATGCTGAGGTCAAGAG