1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AGCGTAACTTCAGGCCGCCGGTCGCTCTACGCATCCTGCTCCCCGTTCTCGTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatccgagctcgattgcgtgggtggattgccttatctcacccaatcattcaaccag
species | Zea mays |
transcript | GRMZM2G097768_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|101389587|gb|EB816726.1|EB816726
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGTAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|89758031|gb|DY687374.1|DY687374
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: AGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|50325333|gb|CO520459.1|CO520459
genomic: AGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211126442|gb|FL284297.1|FL284297
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|148987704|gb|EE031592.2|EE031592
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|71766862|gb|DR964799.1|DR964799
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211019849|gb|FL284291.1|FL284291
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211019851|gb|FL284293.1|FL284293
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|149077604|gb|EE166304.2|EE166304
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|50325566|gb|CO520692.1|CO520692
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|148964510|gb|EC905855.2|EC905855
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|71331313|gb|DR802490.1|DR802490
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211126451|gb|FL284306.1|FL284306
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211127376|gb|FL284319.1|FL284319
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|148991896|gb|EE033498.2|EE033498
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211126444|gb|FL284299.1|FL284299
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211019850|gb|FL284292.1|FL284292
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|211126449|gb|FL284304.1|FL284304
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTCEST: gi|148958173|gb|EC904377.2|EC904377
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGTAACTTCAGGCCGCCGGTCGCTCTACGCATCCTGCTCCCCGTTCTCGTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatccgagctcgattgcgtgggtggattgccttatctcacccaatcattcaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC