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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTAACTTCAGGCCGCCGGTCGCTCTACGCATCCTGCTCCCCGTTCTCGTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatccgagctcgattgcgtgggtggattgccttatctcacccaatcattcaaccag

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6601696|gb|AW256092.1|AW256092
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|101389587|gb|EB816726.1|EB816726
EST:     GTCGTAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|89758031|gb|DY687374.1|DY687374
EST:     AGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: AGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|50325333|gb|CO520459.1|CO520459
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211126442|gb|FL284297.1|FL284297
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|148987704|gb|EE031592.2|EE031592
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|71766862|gb|DR964799.1|DR964799
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211019849|gb|FL284291.1|FL284291
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211019851|gb|FL284293.1|FL284293
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|149077604|gb|EE166304.2|EE166304
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|50325566|gb|CO520692.1|CO520692
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|148964510|gb|EC905855.2|EC905855
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|71331313|gb|DR802490.1|DR802490
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211126451|gb|FL284306.1|FL284306
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211127376|gb|FL284319.1|FL284319
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|148991896|gb|EE033498.2|EE033498
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211126444|gb|FL284299.1|FL284299
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211019850|gb|FL284292.1|FL284292
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|211126449|gb|FL284304.1|FL284304
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
EST: gi|148958173|gb|EC904377.2|EC904377
EST:     GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCG                         ATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC
genomic: GTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatc ... attcaaccagATCCAATTTCGCGCGCGGGTCGGGCTCGCCTTCTCCTCCAGTCTCCACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGTAACTTCAGGCCGCCGGTCGCTCTACGCATCCTGCTCCCCGTTCTCGTCGGAGATCCACCGGGGCAGCCTTTCTTTCCCCTTCCTCAATCAAGTCGgtgagtaatccgagctcgattgcgtgggtggattgccttatctcacccaatcattcaaccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC