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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCGCCGTCGCGGTCGCGCCCCATGGCGGGGAAGTCGCGACCGCCCAAGCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgcccctttcccccgtctgatccggaatttacggagggccttttttgggggattttttgttggcgttggcgggtggcgtatctggggacatgtgt...

Basic information

species Zea mays
transcript GRMZM2G097726_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097726_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g08880.2 (Oryza sativa), 5'ss of exon 1
---CCTTCGCCGTCGCGGTCGCGCCCCATGGCGGGGAAGTCGCGACCGCCCAAGCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgag-tgcccctttcccccgtctgatccggaatttacggagggcct---tttttgggggattttttgttggcgttggcgggtggcgtatctggggacatgtgt---
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CCCCTCTCGCCGTCGCCGTCGCGTCCCATGGCG---AAGTCGCGGCCGCCCAAGCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctccccctcccacctccccaaccgctgctcccttcgatccggaatttctgggggtttttttggggg-------ggattttttttgtgggggcgtgggtttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211075545|gb|FL228303.1|FL228303
EST:     GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC                         CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
EST: gi|211075551|gb|FL228309.1|FL228309
EST:     GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC                         CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
EST: gi|91874652|gb|EB404609.1|EB404609
EST:     GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC                         CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG