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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACACGGGCGGCGAAGCGGGGTCCAGGACCTCGCCGCAGCTGACCAGGTCGCTGTCCCAGAGGGCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAGgtttgaggaattcttgtgcctcttgtttgatctatgtttaattagatcgcaatatagcatgttttgttaagtagcagctgttccaagggattcttagtca...

Basic information

species Zea mays
transcript GRMZM2G097502_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211033161|gb|FL324562.1|FL324562
EST:     GCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAG                         GTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
genomic: GCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAGgtttgaggaa ... attgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
EST: gi|149013699|gb|EE043151.2|EE043151
EST:     CGCTGTCCCAGAGGGCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAG                         GTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
genomic: CGCTGTCCCAGAGGGCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAGgtttgaggaa ... attgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA