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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttcttgctgaagctgaactaaggttttgtgattacaaatttacaactag

Basic information

species Zea mays
transcript GRMZM2G097421_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097421_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g35570.1 (Oryza sativa), 5'ss of exon 7
CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttc--ttgctgaagctgaactaaggttttgtgattacaaatttacaactag
       ||| |||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |   |||| | ||  ||||| |||  |||  || |||   | |  || ||  | |  || |  |    | || ||     ||| ||     
-------GCACTGGACACTTTCAATACCGCAGTTGTGTCCCCCATCTATTATGCGATGTTTACATCCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGgtatgcaggttttagtaag-ttccacaaatgccagttagtttaagtccatttactagaacaaaaatttgagaatatgttttatggtttccag----

upper sequence: GRMZM2G097421_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G16670.1 (Glycine max), 5'ss of exon 7
CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttcttgctgaa-----gctgaactaaggttttgtgattacaaatttacaactag----------
       |||||||||||||| || || |||||||||||||| |||||||||||  |||| |||||  | ||||| || || ||||| || ||||| |||||       ||   ||||        ||| | || |||        ||||   ||      ||| |||||   | |||| ||      |   |  ||            
-------GCATTGGATACTTTTAACACAGCAGTTGTTTCTCCGATCTACTATGCCTTGTTCACATCTTTTACAATATTAGCTAGTGCAATCATGTTTAAGgttggtattttactgaaacaaaatgaaaaatgcatctaaagagacatcttaacgatcaagtgctcaactatc-tgttgtaatcctgcctcctctgcttttattatttag

upper sequence: GRMZM2G097421_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0086g00190.t01 (Vitis vinifera), 5'ss of exon 7
CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaattttggaaaacttccataaactccaactatttttgtttcttgctgaagctgaactaaggttttgtgattacaaatttacaactag
       || |||||||| ||||| || || ||||||||||| || || |||||  |||| |||||  ||||||||||||| ||||||||||||||||||||| |   || ||  || |  |  | |  || |  |  ||| |||||    ||| | |  |  |     | ||| |||  |             
-------GCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGgtacttccatgttc-aatatattgaaatgcttcttccttttctgttttaaactgtaacatactt----ctctgttattttag------------

upper sequence: GRMZM2G097421_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 7
CTTTCAGGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattcta--attttggaaaacttccataaactccaact-----------atttttgtttcttgctgaagctgaactaaggttttgtgattaca---aatttacaactag-----------------
       ||| ||||||||||||| || || |||||||||||||||||||||||  |||| |||||  | || ||||| || ||||  || ||||| |||||| ||||  ||      | || | || | || |   |            | | |    | || |      ||   |||  |    | | | ||   ||  |  || | |                 
-------GCACTGGATACTTTCAACACAGCCGTTGTTTCTCCCATCTACTATGCCTTGTTCACATCATTTACTATTTTAGCCAGTGTGATTATGTTTAAGgtactctatcatgcacacatacatgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149013792|gb|EE043259.2|EE043259
EST:     ACATCCCTCACAATTTTGGCAAGGGCCATAATGTTCAAGG                         GACGGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGGGGGGT
genomic: ACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAA-Ggtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTT-GTGGGT
EST: gi|149005297|gb|EE039846.2|EE039846
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|78118378|gb|DV536764.1|DV536764
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|149012853|gb|EE042695.2|EE042695
EST:     TGCGATGTTTACATCCCTCACAAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: TGCGATGTTTACATCCCTCAC-AATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|148947644|gb|EC893124.2|EC893124
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|86468982|gb|DY235352.1|DY235352
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|149101363|gb|EE187480.2|EE187480
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|94477225|gb|EB706183.1|EB706183
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|149070088|gb|EE158488.2|EE158488
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|44901394|gb|CK827939.1|CK827939
EST:     GGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: GGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|86471099|gb|DY237469.1|DY237469
EST:     TTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: TTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|148948890|gb|EC894304.2|EC894304
EST:     ATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|211094620|gb|FL143748.1|FL143748
EST:     TGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: TGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|94478877|gb|EB707835.1|EB707835
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|78123628|gb|DV542012.1|DV542012
EST:     ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: ATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
EST: gi|148951156|gb|EC896835.2|EC896835
EST:     TTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG                         GACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT
genomic: TTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAGgtattctaat ... ttacaactagGACTGGTCTGGGCAGAGTATAAGCAGTATTGCCTCTGAGATTTGTGGGTTT