1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCATCTCCAGGCCGCGTCGAATTCTTCCATCCACCGCACCGGTCGACGACGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCCgtgagtgccgaacgaggctttacctccgtgggtttctgatcgcctcgcgatgttcgatctgtaacggtctttttttttgtcacggtgtgcag
species | Zea mays |
transcript | GRMZM2G097226_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCC ATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTGEST: gi|211069303|gb|FL193602.1|FL193602
genomic: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCCgtgagtgccg ... cggtgtgcagATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTG
EST: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCC ATGCTGGGACAGATTTTGCGAAGGCTCCGACCAGCGGTGGCGGCTGAGGTGEST: gi|32799904|gb|CD952140.1|CD952140
genomic: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCCgtgagtgccg ... cggtgtgcagATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTG
EST: GATCCGGTCCC ATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTGEST: gi|91057168|gb|EB167586.1|EB167586
genomic: GATCCGGTCCCgtgagtgccg ... cggtgtgcagATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTG
EST: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCC ATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTG
genomic: CGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCCgtgagtgccg ... cggtgtgcagATGCTGGGACAGGTTTTGCGAAGACTCCGACCAGCGGTGGCGGCTGAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATCTCCAGGCCGCGTCGAATTCTTCCATCCACCGCACCGGTCGACGACGACGACGAGGATGCTGGGCGCAGCGAGGAGGCAGCTTGGATCCGGTCCCgtgagtgccgaacgaggctttacctccgtgggtttctgatcgcctcgcgatgttcgatctgtaacggtctttttttttgtcacggtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT