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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTGCCAGCGGCGGATGCCGCCCCGCCCCGCTGCTGACCACCGCCGCTGCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatccggaagctcggttcgattcgggaggggggagccgcctggcgtggccgccgctggagtcacccagggcagccccttttcagtttagggtaa...

Basic information

species Zea mays
transcript GRMZM2G096480_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096480_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g07490.1 (Oryza sativa), 5'ss of exon 1
TGCCTGCCAGCGGCGGATGCCGCCCCGCCCCGCTGCTGACCACCGCCGCTGCTGAGCATGGCCGCCGC---TCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatccggaagctcggttcgattcgggaggggggagccgcctggcgtggccgcc-gctggagtcacccagggcagccccttttcagtttagggtaa-
    |||   || |      | | |||||| || || | | ||| | ||||  |||||||||||||||    ||||| ||||| |||||||||||||||||||||| | |  ||  |  | | | |    ||  |  |     |  || |||   |  |    ||||   ||      || ||| |    |  |  | ||||   
--GATGCTGCCGCCCCGCCTC-CGCCGCCCTGCCGCCGGCGACCTCTGCTGACGAGCATGGCCGCCGCGGCCCCCGCCGGCGCCCAGAACCGCTGCGTCTTCGgtacgggccccctaccccccgcttccctctcgccgtcttcg--gcatggttcgatcctgagctgagctccggggagggagctcacggtgtgcgtggggtgcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211352084|gb|FL106817.1|FL106817
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: gi|211354482|gb|FL106822.1|FL106822
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: gi|211354484|gb|FL106824.1|FL106824
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: gi|211354480|gb|FL106820.1|FL106820
EST:     CTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTNGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGC
genomic: CTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCT-GCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGC
EST: gi|211354488|gb|FL106828.1|FL106828
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: gi|211354485|gb|FL106825.1|FL106825
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: gi|211352083|gb|FL106816.1|FL106816
EST:     GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG                         TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG