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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCTGCTCTGAGAACTGGATATGCTGGGCCTAGCACCCCTCCGCTCTGCGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccctgcgcctcctcgttctccagtcctccctcgctcccttcctcctcccgtccccttcttttttcatctcaagtgaaatgatgtattgttttctccctcggacgggcag

Basic information

species Zea mays
transcript GRMZM2G095782_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091690|gb|DV520064.1|DV520064
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|211213555|gb|FL114043.1|FL114043
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATAACTCG                         C-G--GCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|71317330|gb|DR795358.1|DR795358
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|211213558|gb|FL114046.1|FL114046
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATAACTCG                         CAGCGGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|211213554|gb|FL114042.1|FL114042
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCG-CTGCGGCCGAAATAACTCG                         CAGCGGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|37423784|gb|CF649621.1|CF649621
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|101391179|gb|EB817523.1|EB817523
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC