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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCTGCTCTGAGAACTGGATATGCTGGGCCTAGCACCCCTCCGCTCTGCGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccctgcgcctcctcgttctccagtcctccctcgctcccttcctcctcccgtccccttcttttttcatctcaagtgaaatgatgtattgttttctccctcggacgggcag

Basic information

species Zea mays
transcript GRMZM2G095782_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101390146|gb|EB817005.1|EB817005
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCT--                         C-GCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|33468040|gb|CF245089.1|CF245089
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|37423784|gb|CF649621.1|CF649621
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|101391179|gb|EB817523.1|EB817523
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCG                         CAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|76013636|gb|DT940806.1|DT940806
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCT--                         C-GCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
EST: gi|91876899|gb|EB406856.1|EB406856
EST:     CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCT--                         C-GCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC
genomic: CGCCTCTTCCTATCCGCGCCTCCGCCACCGCCTGCGGCCGAAATACCTCGgtaaagccct ... ggacgggcagCAGCAGCTCGCCAATGGCTGCCAACTCTCTCTTCTCGCGCCAGAGGCGGCC