1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAACCCTCACAACAGTGCATCGTCTCTCCTGTCCCCGCCATTTGGTTCGGAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccgcgccctctgctgcggctacgggagctagctcgtgaattcaactcttttttcatatttttttaattcatttagctgcctttttctgtgttgtttctgcggcag
species | Zea mays |
transcript | GRMZM2G095727_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACTCTCGCGGCCTCATCTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGEST: gi|78086698|gb|DV515091.1|DV515091
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCG-CCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAG
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGTEST: gi|31441071|gb|CD510502.1|CD510502
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGTEST: gi|89252032|gb|DY623818.1|DY623818
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGTEST: gi|94478976|gb|EB707934.1|EB707934
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGTEST: gi|71432179|gb|DR813229.1|DR813229
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGTEST: gi|211378749|gb|FL130659.1|FL130659
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
EST: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAG AGTTCGTGAGGGTCGCCCCCGGGGGATCTCGAGACGTCCGTTTCCAAGAGT
genomic: GAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccg ... tctgcggcagAGTTCGTGAGGGTCGCCCCCAGGGGATCTCGAGACGTCCGTTTCCAAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAACCCTCACAACAGTGCATCGTCTCTCCTGTCCCCGCCATTTGGTTCGGAACTCTCGCGGCCTCAACTCCTCCTCGTCATCGTAACACCCACGCTTAGgtgcgcaccgcgccctctgctgcggctacgggagctagctcgtgaattcaactcttttttcatatttttttaattcatttagctgcctttttctgtgttgtttctgcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC