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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATGCTTTGCTGTGCTGGCCACCAGGCGTCCCTTCTCCTCTTCGCTCTGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtactccgagttcctcttgctgaattctagatttgtgcgctcaattcatgcttttccctttccgtagtgcacaacagcacaagttaatgttctc...

Basic information

species Zea mays
transcript GRMZM2G095323_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878948|gb|EB408905.1|EB408905
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|211366787|gb|FL192156.1|FL192156
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|78125182|gb|DV543566.1|DV543566
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCGGGACCAG                         AAATTCGGAGAAGCTGTTGGATCCAA
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|148956175|gb|EC901959.2|EC901959
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|71770155|gb|DR968092.1|DR968092
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|76293362|gb|DV032930.1|DV032930
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|71439253|gb|DR820303.1|DR820303
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|71310796|gb|DR791700.1|DR791700
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|148986012|gb|EE029858.2|EE029858
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|89756630|gb|DY686595.1|DY686595
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|88755486|gb|DY539627.1|DY539627
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|71773093|gb|DR971011.1|DR971011
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|74233328|gb|DT641242.1|DT641242
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|78116974|gb|DV535361.1|DV535361
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|78115630|gb|DV534018.1|DV534018
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: gi|71428073|gb|DR809123.1|DR809123
EST:     TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG                         GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGATGCTTTGCTGTGCTGGCCACCAGGCGTCCCTTCTCCTCTTCGCTCTGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtactccgagttcctcttgctgaattctagatttgtgcgctcaattcatgcttttccctttccgtagtgcacaacagcacaagttaatgttctc

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