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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAGACCTGCCTAAGTTGAGTATTAACAGACTCGGGCGGTTCGTGTCGCTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtagccatatacgtatggtatggatactatatcactatgagcagttgacgtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcag

Basic information

species Zea mays
transcript GRMZM2G095141_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095141_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g04020.1 (Oryza sativa), 5'ss of exon 2
---------TCGGAGACCTGCCTAAGTTGAGTATTAACAGACTCGGGCGGTTCGTGTCGCTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtg-tagccatatacgtatggtatggatactatatcactatgagcagttgac--gtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcag
         | || |||||||| |||||||||||||||||||| |   |||||   || |   | ||  | ||  ||         |  || |||  || |||   |||||||||  |||   | |||   ||  |    |||  |   ||  |      ||  |  ||       |  ||         |  | |     ||  |                                                                                      
CACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTC---TCTCCAAGTGCCTGCAGAGCA------AGTGTTGATGACAGCAACACCAACAAgtaagttctagtgttctactgttgcaaactttaccgtgctacatttcttcctttcctagttgttgctttgtcggtatttttactttgacgcggaatgttt-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211456363|gb|FL164538.1|FL164538
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCCTCAGATGGCATTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA