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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatatttcccccttacattcgtttacacatcgatcgccaaaactgagatgtggttgatggcagcatctgattcgaattttgtgttcttatgcag

Basic information

species Zea mays
transcript GRMZM2G095114_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324422|gb|CO519548.1|CO519548
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211192048|gb|FL055486.1|FL055486
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194451|gb|FL055502.1|FL055502
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194439|gb|FL055490.1|FL055490
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196844|gb|FL055505.1|FL055505
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|4612896|gb|AI603735.1|AI603735
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194442|gb|FL055493.1|FL055493
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196843|gb|FL055504.1|FL055504
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196851|gb|FL055512.1|FL055512
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|60356830|gb|DN223803.1|DN223803
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196849|gb|FL055510.1|FL055510
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196854|gb|FL055515.1|FL055515
EST:     CTCCTTCCTCCGATCKTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CTCCTTCCTCCGATC-TGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32804087|gb|CD956323.1|CD956323
EST:     GATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: GATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|13558271|gb|BG549627.1|BG549627
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCTCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGC-CCAGGGGCACCCAATG
EST: gi|4610157|gb|AI600996.1|AI600996
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCG-GGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194447|gb|FL055498.1|FL055498
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32788395|gb|CD940631.1|CD940631
EST:     GATCCTGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: GATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32801928|gb|CD954164.1|CD954164
EST:     GATCCTGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: GATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211288302|gb|FL055521.1|FL055521
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|60356922|gb|DN223895.1|DN223895
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|5566778|gb|AI881644.1|AI881644
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194450|gb|FL055501.1|FL055501
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194438|gb|FL055489.1|FL055489
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACC-AATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194445|gb|FL055496.1|FL055496
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211288305|gb|FL055524.1|FL055524
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194444|gb|FL055495.1|FL055495
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211192050|gb|FL055488.1|FL055488
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|13558630|gb|BG549986.1|BG549986
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCATGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|9254192|gb|BE344660.1|BE344660
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32795180|gb|CD947416.1|CD947416
EST:     GATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: GATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196853|gb|FL055514.1|FL055514
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCWAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|76012388|gb|DT939558.1|DT939558
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211288303|gb|FL055522.1|FL055522
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|19350796|gb|BM895328.1|BM895328
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|18180735|gb|BM381945.1|BM381945
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194452|gb|FL055503.1|FL055503
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194446|gb|FL055497.1|FL055497
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196847|gb|FL055508.1|FL055508
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211192049|gb|FL055487.1|FL055487
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194440|gb|FL055491.1|FL055491
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196857|gb|FL055518.1|FL055518
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194441|gb|FL055492.1|FL055492
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|84980176|gb|DW530525.1|DW530525
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196856|gb|FL055517.1|FL055517
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196848|gb|FL055509.1|FL055509
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211288300|gb|FL055519.1|FL055519
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196855|gb|FL055516.1|FL055516
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32804206|gb|CD956442.1|CD956442
EST:     CCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196852|gb|FL055513.1|FL055513
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211196845|gb|FL055506.1|FL055506
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTMAMCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTT-CCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211288306|gb|FL055525.1|FL055525
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211192047|gb|FL055485.1|FL055485
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|211194443|gb|FL055494.1|FL055494
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|71313635|gb|DR793393.1|DR793393
EST:     CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: gi|32801729|gb|CD953965.1|CD953965
EST:     CCGTACAAGATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 242

CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 193

CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 142

CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 181

CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCTCCCCGCTGCCGCCGCCGCCGGACAGTGCACCGACGATACGACCTCCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatatttcccccttacattcgtttacacatcgatcgccaaaactgagatgtggttgatggcagcatctgattcgaattttgtgttcttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG