1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGTGCCTTTCCGGCGGCGCTGTTGTTCGATTGCGATGGTGTGCTGGTGGACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattccttccatccgtactcccgttcatctccattttcttgatgcagctgcttccactatgttaatcttttctgcggtacctatgctcctagttat...
species | Zea mays |
transcript | GRMZM2G094978_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACTGAAAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGEST: gi|91056651|gb|EB167069.1|EB167069
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATT-AGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|211135672|gb|FL156035.1|FL156035
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|211136605|gb|FL156036.1|FL156036
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|149014075|gb|EE043602.2|EE043602
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|13490397|gb|BG517161.1|BG517161
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|149112364|gb|EE295251.2|EE295251
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|211136608|gb|FL156039.1|FL156039
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|50333792|gb|CO528918.1|CO528918
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|71764323|gb|DR962260.1|DR962260
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|71300514|gb|DR786312.1|DR786312
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|211136612|gb|FL156043.1|FL156043
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCCCAGGEST: gi|211136613|gb|FL156044.1|FL156044
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|101382873|gb|EB813490.1|EB813490
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|211136615|gb|FL156046.1|FL156046
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|13558960|gb|BG550315.1|BG550315
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|71448345|gb|DR829395.1|DR829395
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|94479515|gb|EB708473.1|EB708473
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACTGAGAAGGATGGCCCCCGCATCTCCCTTCA-CGAAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|86467369|gb|DY233739.1|DY233739
genomic: ACTGAGAAGGATGGCCACCGCATCTCC-TTCAACGAAA-CCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAAAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCAGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAAAATTGCTCAAGEST: gi|71300530|gb|DR786320.1|DR786320
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|50327117|gb|CO522243.1|CO522243
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|101388003|gb|EB816016.1|EB816016
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGGEST: gi|71766392|gb|DR964329.1|DR964329
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
EST: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAG AGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
genomic: ACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattcc ... atatttacagAGGGAATTAGGTGTCAGCTGGGATGTTGAACTGTATGGAGAATTGCTCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGCCTTTCCGGCGGCGCTGTTGTTCGATTGCGATGGTGTGCTGGTGGACACTGAGAAGGATGGCCACCGCATCTCCTTCAACGAAACCTTCGCCGAGgtccaattccttccatccgtactcccgttcatctccattttcttgatgcagctgcttccactatgttaatcttttctgcggtacctatgctcctagttat
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