Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttcttccggccccgcaatctcatctccacccccgctcctcctccggcaatccatcgctcgggttgtccctactgggcgacacgagggcggcca...

Basic information

species Zea mays
transcript GRMZM2G094497_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211474167|gb|FL062075.1|FL062075
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469120|gb|FL062058.1|FL062058
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476692|gb|FL062093.1|FL062093
EST:     ATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAA-
genomic: ATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476700|gb|FL062101.1|FL062101
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466590|gb|FL062041.1|FL062041
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459011|gb|FL062002.1|FL062002
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211355901|gb|FL061989.1|FL061989
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042632|gb|FL062114.1|FL062114
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|58029618|gb|CX725045.1|CX725045
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|31358862|gb|CD443219.1|CD443219
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211474177|gb|FL062085.1|FL062085
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042620|gb|FL062102.1|FL062102
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|13150538|gb|BG320860.1|BG320860
EST:     TCCTTCCCAACTCCGCAGCGTA-SCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466588|gb|FL062039.1|FL062039
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211045585|gb|FL062117.1|FL062117
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211045586|gb|FL062118.1|FL062118
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476689|gb|FL062090.1|FL062090
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459001|gb|FL061992.1|FL061992
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211474168|gb|FL062076.1|FL062076
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469113|gb|FL062051.1|FL062051
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476694|gb|FL062095.1|FL062095
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464051|gb|FL062022.1|FL062022
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|31355490|gb|CD439847.1|CD439847
EST:     AACGTCCCAACTCCGCAGCGAAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCTTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466591|gb|FL062042.1|FL062042
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466583|gb|FL062034.1|FL062034
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464054|gb|FL062025.1|FL062025
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471644|gb|FL062069.1|FL062069
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476695|gb|FL062096.1|FL062096
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464058|gb|FL062029.1|FL062029
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459012|gb|FL062003.1|FL062003
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042625|gb|FL062107.1|FL062107
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464059|gb|FL062030.1|FL062030
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471635|gb|FL062060.1|FL062060
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGTAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042624|gb|FL062106.1|FL062106
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|31349484|gb|CD433841.1|CD433841
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211355897|gb|FL061985.1|FL061985
EST:     ATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAA-
genomic: ATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|14191177|gb|BG833407.1|BG833407
EST:     GCGATCCAGATCCAG                         GTTTCTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAA
genomic: GCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTT-TTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAA
EST: gi|31351385|gb|CD435742.1|CD435742
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042627|gb|FL062109.1|FL062109
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211461526|gb|FL062008.1|FL062008
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471646|gb|FL062071.1|FL062071
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471643|gb|FL062068.1|FL062068
EST:     TCCTTCCCAACTCCGCAGCGT-MSCTCTCCGCGGCGCGATCCNSATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAA-
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466592|gb|FL062043.1|FL062043
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042631|gb|FL062113.1|FL062113
EST:     AGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: AGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211355900|gb|FL061988.1|FL061988
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042628|gb|FL062110.1|FL062110
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211474179|gb|FL062087.1|FL062087
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471645|gb|FL062070.1|FL062070
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476697|gb|FL062098.1|FL062098
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476690|gb|FL062091.1|FL062091
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCRTCGACRTGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|30160605|gb|CB924334.1|CB924334
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGTAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211461527|gb|FL062009.1|FL062009
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464060|gb|FL062031.1|FL062031
EST:     TCCTTCCCAACTCCGCAGCGTMSSCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTYAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459000|gb|FL061991.1|FL061991
EST:     TCCTTCCCAACTCCGCAGCGTARCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476699|gb|FL062100.1|FL062100
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|31628315|gb|CD526548.1|CD526548
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGTAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469119|gb|FL062057.1|FL062057
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469117|gb|FL062055.1|FL062055
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459009|gb|FL062000.1|FL062000
EST:     CCTTCCCAACTCCGCAGCGTTA-CCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGAGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: CCTTCCCAACTCCGCAGCG-TAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469112|gb|FL062050.1|FL062050
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459007|gb|FL061998.1|FL061998
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211474171|gb|FL062079.1|FL062079
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469111|gb|FL062049.1|FL062049
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211042623|gb|FL062105.1|FL062105
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211471641|gb|FL062066.1|FL062066
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464050|gb|FL062021.1|FL062021
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459003|gb|FL061994.1|FL061994
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211464057|gb|FL062028.1|FL062028
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|31358847|gb|CD443204.1|CD443204
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211469108|gb|FL062046.1|FL062046
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         G-TTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211459010|gb|FL062001.1|FL062001
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211466585|gb|FL062036.1|FL062036
EST:     AACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: AACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211476687|gb|FL062088.1|FL062088
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
EST: gi|211458999|gb|FL061990.1|FL061990
EST:     TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAG                         GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC
genomic: TCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 430

GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 828

GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 373

GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 727

GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttc ... ctgttgccagGTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCCGTCGCCTCGCCTATCCGATCTGCCACCTCCTCCCGTCTCGCACGTTCCTTCCCAACTCCGCAGCGTAGCCTCTCCGCGGCGCGATCCAGATCCAGgtacgccttcttccggccccgcaatctcatctccacccccgctcctcctccggcaatccatcgctcgggttgtccctactgggcgacacgagggcggcca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctcc